View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18143_low_5 (Length: 412)
Name: NF18143_low_5
Description: NF18143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18143_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 18965311 - 18965708
Alignment:
| Q |
1 |
taactgaacccaaacttgaaatatatatccaattgaagagacattaatgttttgaattttattgtcttggtggcagggttcaagaaacggaacgagtgta |
100 |
Q |
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| T |
18965311 |
taaccgaacccaaacttaaaatatatatccaattgaagagacattaatgttttgaattttattgtcttggtggcagggttcaagaaacggaatgagtgca |
18965410 |
T |
|
| Q |
101 |
cttggccagagtatgtgaaagaaacacaacgatgtaagcaaatcaatccattgcatgaaccaacgatcccatggcagttctcgtaattggatgggtggta |
200 |
Q |
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| T |
18965411 |
cttggcccgagtatgtgaaagaaacacaacggtgtaagcaaatcaatccattgcatgaaccaacgatcccatggcagttatcgtaattggatgggtggta |
18965510 |
T |
|
| Q |
201 |
ataatcgttggtgcgttgtgat---------------acgggttggacattaaaatcacctccaaattgtgcacgggggatggaaatccacgtacactcc |
285 |
Q |
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| T |
18965511 |
ataatcattgatgcgtcgtgataaacgaatcacagagacgggttggacaataaaatcacctccaaattgtgcaagggggatggaaatccacgtacactcc |
18965610 |
T |
|
| Q |
286 |
accaaacgactaatagagatggggttgacattaacatctcgatcaaagtgtgagagaactgcgagttgtgggtttcgtgcagaaaatttaaggtgctt |
383 |
Q |
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| T |
18965611 |
accaaacgactaatagagatggggttgacattaacatctcgatcaaagtgtgagagaactgcgagttgtgggtttcgtgcagataatttaaggtgctt |
18965708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 174
Target Start/End: Complemental strand, 14076249 - 14076211
Alignment:
| Q |
136 |
aagcaaatcaatccattgcatgaaccaacgatcccatgg |
174 |
Q |
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| T |
14076249 |
aagcaaatcaatccattacatgaaccgacgatcccatgg |
14076211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 174
Target Start/End: Complemental strand, 14386277 - 14386239
Alignment:
| Q |
136 |
aagcaaatcaatccattgcatgaaccaacgatcccatgg |
174 |
Q |
| |
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| T |
14386277 |
aagcaaatcaatccattacatgaaccgacgatcccatgg |
14386239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 164
Target Start/End: Original strand, 22520862 - 22520890
Alignment:
| Q |
136 |
aagcaaatcaatccattgcatgaaccaac |
164 |
Q |
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| T |
22520862 |
aagcaaatcaatccattgcatgaaccaac |
22520890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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