View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18144_high_1 (Length: 516)
Name: NF18144_high_1
Description: NF18144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18144_high_1 |
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| [»] chr6 (3 HSPs) |
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| [»] scaffold0537 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 213 - 516
Target Start/End: Complemental strand, 26137541 - 26137239
Alignment:
| Q |
213 |
gaatccacactttactcgatctttcccacttcaaccagttctaaatcaatgaccttgagagatttgatccaatttggggtgcaaatcaaagcttcaacag |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
26137541 |
gaatccacactttactcgatctttcccacttcaaccagttctaaatcaatgaccttgagagatttgatccaatttggggtgcaa-tcaaagcttcaacag |
26137443 |
T |
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| Q |
313 |
tagagatttaattaactaccaaacgagtaaaggactcaacctccagtactaaacgttgactagacagatacgttggatacaataataaccaatatatctc |
412 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26137442 |
tagagatttaattaactaccaaacgagtaaaggactcgacctccagtactaaacgttgacgagacagatacgttggatacaataataaccaatatatctc |
26137343 |
T |
|
| Q |
413 |
aatctacgcggtaaacaatatgatatttgtttgtgtaaatgtaggtacatcatcttcacgaccatcctccaaataccttaccaactcattattgtgtcca |
512 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26137342 |
aatctacgcggtaaacagtatgatatttgtttgtgtaaatgtaggtacatcatcttcacgaccatcctccaaataccttaccaactcattattgtgtcca |
26137243 |
T |
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| Q |
513 |
atgt |
516 |
Q |
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|||| |
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| T |
26137242 |
atgt |
26137239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 11 - 145
Target Start/End: Complemental strand, 26137741 - 26137609
Alignment:
| Q |
11 |
aacaatatgcaaatgcaaaaggcagtagcgaatccaatcctaacactaccaaacataataagattaaaaatttaaataaacacaacaacgatacgacagc |
110 |
Q |
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| T |
26137741 |
aacaaaatgcaaatgcaaaaggcagtagcgaatccaatcctaacactaccaaacataataagattaaaaatttaaataagcacaacgacg--acgacagc |
26137644 |
T |
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| Q |
111 |
aacacaaagaaataaatacaacactcacaaatacc |
145 |
Q |
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| T |
26137643 |
aacacaaagaaataaatacaacactcacaaatacc |
26137609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 435 - 516
Target Start/End: Complemental strand, 25579013 - 25578932
Alignment:
| Q |
435 |
atatttgtttgtgtaaatgtaggtacatcatcttcacgaccatcctccaaataccttaccaactcattattgtgtccaatgt |
516 |
Q |
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| T |
25579013 |
atatttgtttgtgtaaatgtaggtacatcatcttcacgaccatcctccaaataccttaccaactcattattgtgtccaatgt |
25578932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 252 - 445
Target Start/End: Original strand, 27708481 - 27708676
Alignment:
| Q |
252 |
tctaaatcaatgaccttgagagatttgatccaatttggggtgcaaatcaaagcttcaacagtaga--gatttaattaactaccaaacgagtaaaggactc |
349 |
Q |
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|||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||| |||||||| |||| | |||||||| |||||||| |
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| T |
27708481 |
tctaaatcaatgaccttgggagatttgatccaattttgggtgcagatcaaagcttcaacagtagagggatttaatgaactgcgaaacgagtcaaggactc |
27708580 |
T |
|
| Q |
350 |
aacctccagtactaaacgttgact-agacagatacgttggatacaataataaccaatatatctcaatctacgcggtaaacaatatgatatttgtttg |
445 |
Q |
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||||||||||||||| | ||||| ||| ||||||| |||||||| |||| ||||||||||| ||| |||| ||| || ||||||||| |||| |
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| T |
27708581 |
gacctccagtactaaaagctgactcaga-agatacggtggatacaggaatagacaatatatctcgtgctatgcgggaaagaacatgatatttatttg |
27708676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 448 - 502
Target Start/End: Original strand, 27708704 - 27708758
Alignment:
| Q |
448 |
taaatgtaggtacatcatcttcacgaccatcctccaaataccttaccaactcatt |
502 |
Q |
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||||||||| |||||||||||| |||||||||||| ||||||| |||||||||| |
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| T |
27708704 |
taaatgtagaaacatcatcttcaggaccatcctccagatacctttccaactcatt |
27708758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0537 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold0537
Description:
Target: scaffold0537; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 252 - 445
Target Start/End: Complemental strand, 10326 - 10131
Alignment:
| Q |
252 |
tctaaatcaatgaccttgagagatttgatccaatttggggtgcaaatcaaagcttcaacagtaga--gatttaattaactaccaaacgagtaaaggactc |
349 |
Q |
| |
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|||||||||||||||||| ||||||| |||||||| ||||||| |||||||||||||||||||| |||||||| |||||| |||||||| || ||||| |
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| T |
10326 |
tctaaatcaatgaccttggtagatttggtccaattttgggtgcagatcaaagcttcaacagtagagggatttaatgaactacgaaacgagtcaaagactc |
10227 |
T |
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| Q |
350 |
aacctccagtactaaacgttgact-agacagatacgttggatacaataataaccaatatatctcaatctacgcggtaaacaatatgatatttgtttg |
445 |
Q |
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||||||||||||||| | ||||| ||| ||||||| |||||||| ||||| ||||||||||| ||| |||| ||| || ||||||||| |||| |
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| T |
10226 |
gacctccagtactaaaagctgactcaga-agatacggtggatacaggaataaacaatatatctcgtgctatgcggaaaagaacatgatatttatttg |
10131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 252 - 412
Target Start/End: Original strand, 17384818 - 17384980
Alignment:
| Q |
252 |
tctaaatcaatgaccttgagagatttgatccaatttggggtgcaaatcaaagcttcaacagtaga--gatttaattaactaccaaacgagtaaaggactc |
349 |
Q |
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|||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||| |||| |||||||| |||| | |||||||| |||||||| |
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| T |
17384818 |
tctaaatcaatgaccttgggagatttgatccaattttgggtgcagatcaaagcttcaacaatagagggatttaatgaactgcgaaacgagtcaaggactc |
17384917 |
T |
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| Q |
350 |
aacctccagtactaaacgttgact-agacagatacgttggatacaataataaccaatatatctc |
412 |
Q |
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||||||||||||||| | ||||| ||| ||||||| |||||||| |||| ||||||||||| |
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| T |
17384918 |
gacctccagtactaaaagctgactcaga-agatacggtggatacaggaatagacaatatatctc |
17384980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 448 - 502
Target Start/End: Original strand, 17385041 - 17385095
Alignment:
| Q |
448 |
taaatgtaggtacatcatcttcacgaccatcctccaaataccttaccaactcatt |
502 |
Q |
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||||||||| |||||||||||| |||||||||||| ||||||| |||||||||| |
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| T |
17385041 |
taaatgtagaaacatcatcttcaggaccatcctccagatacctttccaactcatt |
17385095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 252 - 365
Target Start/End: Complemental strand, 5885465 - 5885350
Alignment:
| Q |
252 |
tctaaatcaatgaccttgagagatttgatccaatttggggtgcaaatcaaagcttcaacagtaga--gatttaattaactaccaaacgagtaaaggactc |
349 |
Q |
| |
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|||||||||||||| ||| |||||||||| |||||| ||||||| ||||||| || ||||||||| |||||||| |||| | ||||| || |||||||| |
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| T |
5885465 |
tctaaatcaatgacattgggagatttgattcaattttgggtgcagatcaaagttttaacagtagagggatttaatgaactgcgaaacgtgtcaaggactc |
5885366 |
T |
|
| Q |
350 |
aacctccagtactaaa |
365 |
Q |
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||||||||||||||| |
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| T |
5885365 |
gacctccagtactaaa |
5885350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 502
Target Start/End: Complemental strand, 5885242 - 5885189
Alignment:
| Q |
448 |
taaatgtaggtacatcatcttcacgaccatcctccaaataccttaccaactcatt |
502 |
Q |
| |
|
||||||||| |||||||||||| ||| |||||||||||||||| |||||||||| |
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| T |
5885242 |
taaatgtagaaacatcatcttcaggac-atcctccaaatacctttccaactcatt |
5885189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 252 - 317
Target Start/End: Original strand, 51511257 - 51511322
Alignment:
| Q |
252 |
tctaaatcaatgaccttgagagatttgatccaatttggggtgcaaatcaaagcttcaacagtagag |
317 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||| ||||| |
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| T |
51511257 |
tctaaatcaatgaccttgggagatttgatccaattttgggtgcagatcaaagcttcaacaatagag |
51511322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 459 - 500
Target Start/End: Original strand, 51511432 - 51511473
Alignment:
| Q |
459 |
acatcatcttcacgaccatcctccaaataccttaccaactca |
500 |
Q |
| |
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|||||||||||| |||||||||||| ||||||| |||||||| |
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|
| T |
51511432 |
acatcatcttcaggaccatcctccagatacctttccaactca |
51511473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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