View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18144_low_10 (Length: 238)

Name: NF18144_low_10
Description: NF18144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18144_low_10
NF18144_low_10
[»] chr4 (26 HSPs)
chr4 (1-238)||(3438435-3438671)
chr4 (1-238)||(553472-553709)
chr4 (133-236)||(8184031-8184134)
chr4 (132-238)||(8187091-8187197)
chr4 (79-238)||(1548370-1548530)
chr4 (66-236)||(546908-547078)
chr4 (62-238)||(7225813-7225989)
chr4 (134-238)||(7307853-7307957)
chr4 (1-238)||(1524355-1524592)
chr4 (40-203)||(1600447-1600610)
chr4 (40-235)||(55908636-55908831)
chr4 (61-238)||(640908-641085)
chr4 (40-104)||(6006455-6006519)
chr4 (127-203)||(12116570-12116646)
chr4 (40-238)||(12121365-12121563)
chr4 (187-236)||(558493-558542)
chr4 (40-105)||(1533898-1533963)
chr4 (133-217)||(1519143-1519227)
chr4 (132-238)||(1513407-1513513)
chr4 (1-106)||(8186960-8187065)
chr4 (178-238)||(370913-370973)
chr4 (62-106)||(53761702-53761746)
chr4 (131-238)||(1537766-1537873)
chr4 (40-105)||(1495830-1495895)
chr4 (165-238)||(1508036-1508109)
chr4 (42-103)||(12120052-12120113)
[»] chr8 (6 HSPs)
chr8 (1-238)||(18315142-18315379)
chr8 (148-232)||(17628030-17628114)
chr8 (66-238)||(34936097-34936269)
chr8 (134-236)||(27922503-27922605)
chr8 (127-238)||(32151294-32151405)
chr8 (133-224)||(17636402-17636493)
[»] chr3 (7 HSPs)
chr3 (66-238)||(51120827-51120999)
chr3 (62-238)||(13470662-13470838)
chr3 (62-238)||(51113711-51113887)
chr3 (64-238)||(51764372-51764546)
chr3 (178-238)||(514774-514834)
chr3 (157-219)||(27005797-27005859)
chr3 (40-100)||(1657378-1657438)
[»] chr5 (6 HSPs)
chr5 (4-236)||(32267470-32267699)
chr5 (41-234)||(41889463-41889656)
chr5 (139-236)||(41901542-41901639)
chr5 (170-238)||(37937880-37937948)
chr5 (1-104)||(41901407-41901510)
chr5 (170-236)||(38267594-38267660)
[»] chr2 (3 HSPs)
chr2 (66-238)||(45245019-45245191)
chr2 (40-235)||(1037572-1037767)
chr2 (159-216)||(32785799-32785856)
[»] chr7 (3 HSPs)
chr7 (45-203)||(7977606-7977764)
chr7 (62-238)||(15092081-15092257)
chr7 (62-238)||(10614586-10614762)
[»] chr6 (18 HSPs)
chr6 (62-238)||(6432154-6432330)
chr6 (43-238)||(11936186-11936381)
chr6 (43-238)||(11948166-11948361)
chr6 (62-236)||(6402855-6403029)
chr6 (66-236)||(6585171-6585341)
chr6 (62-236)||(7119152-7119326)
chr6 (62-236)||(7131630-7131804)
chr6 (62-238)||(6394857-6395033)
chr6 (1-107)||(9411476-9411582)
chr6 (157-238)||(6423210-6423291)
chr6 (62-235)||(6594536-6594709)
chr6 (157-236)||(10579761-10579840)
chr6 (134-224)||(28935056-28935146)
chr6 (62-238)||(6415959-6416135)
chr6 (131-238)||(6409999-6410106)
chr6 (62-237)||(14820687-14820862)
chr6 (62-103)||(8913914-8913955)
chr6 (131-223)||(12102274-12102366)
[»] chr1 (5 HSPs)
chr1 (165-238)||(29658929-29659002)
chr1 (134-230)||(52082582-52082678)
chr1 (3-236)||(19468373-19468603)
chr1 (165-235)||(7554484-7554554)
chr1 (165-238)||(29718956-29719029)
[»] scaffold0807 (1 HSPs)
scaffold0807 (62-106)||(1394-1438)
[»] scaffold0014 (1 HSPs)
scaffold0014 (67-104)||(88943-88980)


Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 3438435 - 3438671
Alignment:
Q  1 tccccaatttgcagctgcttgatgtgagagaatgcgaccacatatctgacgaaggtgttattcaagttttaaggagacgttgtaagattagacatttgaa 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3438435 tccccaatttgcagctgcttgatgtgagagaatgcgactacatatctgacgaaggtgttattcaagttttaaggagatgttgtaagattagacatttgaa 3438534  T
Q  101 cttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagca 200  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  3438535 cttagctggttgtttaggagtgaatttgtgtgcaatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaa-ta 3438633  T
Q  201 ctccatgtaatctcaaagagttgttgtgggcttttgca 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3438634 ctccatgtaatctcaaagagttgttgtgggcttttgca 3438671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 553709 - 553472
Alignment:
Q  1 tccccaatttgcagctgcttgatgtgagagaatgcgaccacatatctgacgaaggtgttattcaagttttaaggagacgttgtaagattagacatttgaa 100  Q
    |||||||||||||| |||||||| ||||| | | | || |  ||||||| |||| |||| |||| |||||||||| | ||||||| ||||||||||||||    
T  553709 tccccaatttgcagatgcttgatttgagatattcctacgatgtatctgaagaagctgttgttcatgttttaaggacatgttgtaacattagacatttgaa 553610  T
Q  101 cttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagca 200  Q
    |||| |  | |||| | ||||||| || |||  | |||||||| | |||   ||| ||||||| |||| |||||||  |||||||||||||||| |||||    
T  553609 cttaacccgctgttcaagagtgaagttacgtacattgaactttaaagttctcaaactggaggtgttgaacttgtcatttacaagagttgatgatgaagca 553510  T
Q  201 ctccatgtaatctcaaagagttgttgtgggcttttgca 238  Q
    ||  |||| || ||||||||||||| ||||||||||||    
T  553509 cttaatgtgatttcaaagagttgttctgggcttttgca 553472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 133 - 236
Target Start/End: Original strand, 8184031 - 8184134
Alignment:
Q  133 gaatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggct 232  Q
    ||||||||||||| ||| | ||| | ||||| |||| |||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||    
T  8184031 gaatgaactttgaagttccgaaactagaggtgttgaacttgtcacatacaagagttgatgatatagcactctatgcaatctcaaagagttgttgtgggct 8184130  T
Q  233 tttg 236  Q
    ||||    
T  8184131 tttg 8184134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 132 - 238
Target Start/End: Original strand, 8187091 - 8187197
Alignment:
Q  132 ggaatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggc 231  Q
    ||||||||||||||  |||| ||| ||||||| |||| |||||||||||||||||||||||||||| ||||  ||| ||| |||||||||||||||||||    
T  8187091 ggaatgaactttgaaatttccaaactggaggtgttgaacttgtcacatacaagagttgatgataaaacactttatgcaatttcaaagagttgttgtgggc 8187190  T
Q  232 ttttgca 238  Q
    |||||||    
T  8187191 ttttgca 8187197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 79 - 238
Target Start/End: Original strand, 1548370 - 1548530
Alignment:
Q  79 gttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgt-ggaatgaactttgatgtttcaaaattggaggtattgagcttgtcac 177  Q
    |||||||||||||||| |||||||||||| || |||||  ||||||  | | | ||| ||||||||||  || | ||| ||||||| |||| ||||||||    
T  1548370 gttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctactttggactgaactttgaaattcccaaactggaggtgttgaacttgtcac 1548469  T
Q  178 atacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgca 238  Q
    |||||||  |||||||| || ||||| |||| |||||||||||||||||||||||||||||    
T  1548470 atacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgca 1548530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 66 - 236
Target Start/End: Complemental strand, 547078 - 546908
Alignment:
Q  66 gttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggaggtat 165  Q
    |||||||||||| |||||||||| || |||||||||||| |   |||||||| ||||||  |   ||||||||||||||| ||| | |||||||||||      
T  547078 gttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaaattggaggtgg 546979  T
Q  166 tgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttg 236  Q
    ||| |||||||| |||||  ||  ||||| || ||||| |||| |||||||||||||||||||||||||||    
T  546978 tgaacttgtcacgtacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttg 546908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 238
Target Start/End: Original strand, 7225813 - 7225989
Alignment:
Q  62 tcaagttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggag 161  Q
    |||||||||| ||||| |||||||||||||||||||||||||| |    |||  | |||||||  | ||    ||||||||||| |||    ||||||||    
T  7225813 tcaagttttacggagatgttgtaagattagacatttgaacttatcctactgtccaagagtgaagctacgcaacatgaactttgaagttctcgaattggag 7225912  T
Q  162 gtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgca 238  Q
    || |||| |||||||||||||||||||||||| |||| ||| | ||| || ||||||||||||||||| ||||||||    
T  7225913 gtcttgaacttgtcacatacaagagttgatgacaaaggacttcgtgtgatatcaaagagttgttgtggacttttgca 7225989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 134 - 238
Target Start/End: Complemental strand, 7307957 - 7307853
Alignment:
Q  134 aatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggctt 233  Q
    |||||||||| | ||| | |||||||||||||||| ||||||| |||||  |||||||||| ||||||| | | | |||||||||||||||||| |||||    
T  7307957 aatgaactttaaagttcccaaattggaggtattgaacttgtcatatacagaagttgatgatgaagcactacgtatgatctcaaagagttgttgtaggctt 7307858  T
Q  234 ttgca 238  Q
    |||||    
T  7307857 ttgca 7307853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 1524355 - 1524592
Alignment:
Q  1 tccccaatttgcagctgcttgatgtgagagaatgcgaccacatatctgacgaaggtgttattcaagttttaaggagacgttgtaagattagacatttgaa 100  Q
    ||||||||||||||||||||||| | ||  | |||    || ||||||| |||||| || |||| |||||||||||| |||||||  |||| ||||||||    
T  1524355 tccccaatttgcagctgcttgatttaagttattgctcatacgtatctgaagaaggtattcttcaggttttaaggagatgttgtaaacttaggcatttgaa 1524454  T
Q  101 cttagctggttgtt-taggagtgaatttgcgtggaatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagc 199  Q
    ||||||    |||| ||  |  ||| || | ||||||||||||||| ||| | || |||||||| ||||  ||||||| |||||| ||||||||| || |    
T  1524455 cttagccaactgttctaaaatagaactt-catggaatgaactttgaagttcccaatttggaggtgttgaatttgtcacgtacaagtgttgatgatgaaac 1524553  T
Q  200 actccatgtaatctcaaagagttgttgtgggcttttgca 238  Q
    |||| || | |||||| |||||||| |||||||||||||    
T  1524554 actctatatgatctcacagagttgtcgtgggcttttgca 1524592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 203
Target Start/End: Complemental strand, 1600610 - 1600447
Alignment:
Q  40 acatatctgacgaaggtgttattcaagttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaa 139  Q
    |||||||||| |||||| ||  ||||||||||||||||  || ||| ||||||||||||||||||||    |||| |  | ||||  |||| ||||||||    
T  1600610 acatatctgaagaaggtatttgtcaagttttaaggagattttctaaaattagacatttgaacttagcccagtgttcaataatgaagctgcgaggaatgaa 1600511  T
Q  140 ctttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactc 203  Q
    |||||| |||   ||| ||||||| |||| ||||||| ||||||| ||||| ||| ||||||||    
T  1600510 ctttgaagttcttaaactggaggtgttgaacttgtcatatacaagggttgacgatgaagcactc 1600447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 235
Target Start/End: Original strand, 55908636 - 55908831
Alignment:
Q  40 acatatctgacgaaggtgttattcaagttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaa 139  Q
    |||||||||| |||||| ||  | ||||| |||||||| |||||||| ||||||||||||| |||||    |||| | |||||||  | | | |||| ||    
T  55908636 acatatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggttagacatttgaatttagcctactgttcaagagtgaaactacttagaataaa 55908735  T
Q  140 ctttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggctttt 235  Q
    |||| | ||| |  |||| ||||| || | ||||||||||||| | ||||||||| || ||||| || | |||||||||| |||||||||||||||    
T  55908736 ctttaaagttcctgaattagaggtgtttaacttgtcacatacatgtgttgatgatgaaacactctatatgatctcaaagaattgttgtgggctttt 55908831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 61 - 238
Target Start/End: Complemental strand, 641085 - 640908
Alignment:
Q  61 ttcaagttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattgga 160  Q
    ||||||||||||||| | |||||||  ||||||||||||||||||| ||||||   ||||| ||  | | ||||||||| |||||  |  ||| ||||||    
T  641085 ttcaagttttaaggatatgttgtaatgttagacatttgaacttagccggttgtgatggagtaaacctacttggaatgaaatttgaactaccaatattgga 640986  T
Q  161 ggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgca 238  Q
    ||| |||| ||||||| ||||||  ||||||||| || ||||| | || | |||||||| |||  |||| ||||||||    
T  640985 ggtgttgaacttgtcagatacaaacgttgatgatgaaacactctacgtgacctcaaagaattgccgtggtcttttgca 640908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 6006519 - 6006455
Alignment:
Q  40 acatatctgacgaaggtgttattcaagttttaaggagacgttgtaagattagacatttgaactta 104  Q
    |||||||||| |||||||||  |||||||||||||| | || |||||||||||||||||||||||    
T  6006519 acatatctgatgaaggtgttgctcaagttttaaggaaatgtagtaagattagacatttgaactta 6006455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 12116570 - 12116646
Alignment:
Q  127 tgcgtggaatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactc 203  Q
    ||||| ||||||||||||||||| |||| || ||||| |||| ||||||||||||||| ||||||||| || |||||    
T  12116570 tgcgtagaatgaactttgatgttccaaatttagaggtgttgaacttgtcacatacaagtgttgatgatgaatcactc 12116646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 238
Target Start/End: Original strand, 12121365 - 12121563
Alignment:
Q  40 acatatctgacgaaggtgttattcaagttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaa 139  Q
    |||||||||| |||||| || | ||||| ||||||| | |||   ||||||  |||||||||||| |  |||||||||||  |||  ||||  |||||||    
T  12121365 acatatctgaagaaggtattttccaagtcttaaggacatgttccgagattacgcatttgaacttaaccagttgtttaggaaggaagctgcgccgaatgaa 12121464  T
Q  140 ctttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgca 238  Q
    |||||| ||| | ||| | || || |||| ||||||| ||||||  ||||||||| || |||||   |||||||||||| ||||  |||||||||||||    
T  12121465 ctttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggcttttgca 12121563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 236
Target Start/End: Complemental strand, 558542 - 558493
Alignment:
Q  187 ttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttg 236  Q
    |||||||| ||||||||||||| ||||||||||||||| |||||||||||    
T  558542 ttgatgatgaagcactccatgtgatctcaaagagttgtcgtgggcttttg 558493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 105
Target Start/End: Original strand, 1533898 - 1533963
Alignment:
Q  40 acatatctgacgaaggtgttattcaagttttaaggagacgttgtaagattagacatttgaacttag 105  Q
    |||||||||| |||||| ||| ||| |||||||||||| |||||||||| | ||||||||||||||    
T  1533898 acatatctgaagaaggtattagtcatgttttaaggagatgttgtaagatgacacatttgaacttag 1533963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 217
Target Start/End: Original strand, 1519143 - 1519227
Alignment:
Q  133 gaatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaa 217  Q
    ||||||||||||| ||| | ||| | ||||| |||| ||||||||||||||| ||||||||  |||||||| |||| ||||||||    
T  1519143 gaatgaactttgaagttcccaaactagaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgatctcaaa 1519227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 238
Target Start/End: Original strand, 1513407 - 1513513
Alignment:
Q  132 ggaatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggc 231  Q
    |||||||||||||| ||| | ||| | || || |||| |||||||  |||||  ||||||||| || ||||| | |||||||||||| ||||| ||||||    
T  1513407 ggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatttacaaatgttgatgatgaaacactctacgtaatctcaaagtgttgtcgtgggc 1513506  T
Q  232 ttttgca 238  Q
    |||||||    
T  1513507 ttttgca 1513513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 8186960 - 8187065
Alignment:
Q  1 tccccaatttgcagctgcttgatgtgagagaatgcgaccacatatctgacgaaggtgttattcaagttttaaggagacgttgtaagattagacatttgaa 100  Q
    |||||||||||||| |||||||| ||||  | ||| |  |||||||||| |||||| ||  ||||||||| | |||| ||||| |||||||  |||||||    
T  8186960 tccccaatttgcagttgcttgatttgagtcattgctatgacatatctgaagaaggtatttgtcaagttttgaagagatgttgtgagattagggatttgaa 8187059  T
Q  101 cttagc 106  Q
    ||||||    
T  8187060 cttagc 8187065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 370973 - 370913
Alignment:
Q  178 atacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgca 238  Q
    ||||||||||  || || ||||||| ||||| |||||||||||||||||| ||||||||||    
T  370973 atacaagagtctattatgaagcacttcatgtgatctcaaagagttgttgtcggcttttgca 370913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 53761702 - 53761746
Alignment:
Q  62 tcaagttttaaggagacgttgtaagattagacatttgaacttagc 106  Q
    |||||||||||||||| ||||||| ||||| ||||||||||||||    
T  53761702 tcaagttttaaggagatgttgtaacattaggcatttgaacttagc 53761746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 238
Target Start/End: Original strand, 1537766 - 1537873
Alignment:
Q  131 tggaatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtggg 230  Q
    ||||||||||||||| ||| | ||| | || || |||| ||||||| ||||||  ||| |||| ||| ||||   ||||||||||||| ||||| |||||    
T  1537766 tggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcgtggg 1537865  T
Q  231 cttttgca 238  Q
    ||||||||    
T  1537866 cttttgca 1537873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 105
Target Start/End: Original strand, 1495830 - 1495895
Alignment:
Q  40 acatatctgacgaaggtgttattcaagttttaaggagacgttgtaagattagacatttgaacttag 105  Q
    |||||||||| |||||| ||  ||| |||||||||||| |||||||||| | ||||||| ||||||    
T  1495830 acatatctgaagaaggtattggtcatgttttaaggagatgttgtaagatgacacatttggacttag 1495895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 238
Target Start/End: Original strand, 1508036 - 1508109
Alignment:
Q  165 ttgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgca 238  Q
    |||| |||||||||||| |  ||||||||| || ||||   ||||||||||||| ||||| |||||||||||||    
T  1508036 ttgaacttgtcacataccaatgttgatgatgaaacactgtgtgtaatctcaaagtgttgtcgtgggcttttgca 1508109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 103
Target Start/End: Original strand, 12120052 - 12120113
Alignment:
Q  42 atatctgacgaaggtgttattcaagttttaaggagacgttgtaagattagacatttgaactt 103  Q
    |||||| |||||||| ||  ||||||||||| || | || ||||||||||||||||||||||    
T  12120052 atatctaacgaaggtattggtcaagttttaaagaaaagtagtaagattagacatttgaactt 12120113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 18315142 - 18315379
Alignment:
Q  1 tccccaatttgcagctgcttgatgtgagagaatgcgaccacatatctgacgaaggtgttattcaagttttaaggagacgttgtaagattagacatttgaa 100  Q
    |||||||||||||| |||||||| ||||  | |||||  ||||| |||| |||||| ||  |||||||||| | ||  ||| | |||||||||| |||||    
T  18315142 tccccaatttgcagttgcttgatttgagctactgcgataacatacctgaagaaggtatttgtcaagttttacgaagttgttctgagattagacagttgaa 18315241  T
Q  101 cttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagca 200  Q
    ||||||| ||  || | || ||||  | ||||||||||||||| | ||| | ||| ||||||| |||| |||||||||||||| |||||||||| |||||    
T  18315242 cttagctcgtgattcaagaatgaagctacgtggaatgaactttaaagttcccaaactggaggtgttgaacttgtcacatacaaaagttgatgatgaagca 18315341  T
Q  201 ctccatgtaatctcaaagagttgttgtgggcttttgca 238  Q
    ||| |||| ||||||||||||||| || ||||||||||    
T  18315342 ctctatgtgatctcaaagagttgtcgtaggcttttgca 18315379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 17628030 - 17628114
Alignment:
Q  148 tttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggct 232  Q
    |||| ||||||||||| |||| |||||||||||| |||||||||||||||||||||| ||| |||||||||| ||||| ||||||    
T  17628030 tttctaaattggaggtgttgaacttgtcacatactagagttgatgataaagcactccgtgtgatctcaaagaattgttttgggct 17628114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 238
Target Start/End: Original strand, 34936097 - 34936269
Alignment:
Q  66 gttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggaggtat 165  Q
    |||||||||||| ||||| | |||||||||||| |||| || | ||||| |  ||||||  | |   |||||| |||||||||| ||||| | ||||| |    
T  34936097 gttttaaggagatgttgtgacattagacatttgtacttggccgattgttcaaaagtgaaccttcacagaatgatctttgatgttccaaaactagaggtgt 34936196  T
Q  166 tgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgca 238  Q
    ||  ||||||| |||||||||||||||||||| ||||| |||  ||| ||||||||||| |||||||||||||    
T  34936197 tggacttgtcatatacaagagttgatgataaaacactctatgccatcgcaaagagttgtcgtgggcttttgca 34936269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 134 - 236
Target Start/End: Complemental strand, 27922605 - 27922503
Alignment:
Q  134 aatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggctt 233  Q
    |||||||||||| ||| | ||||||||||| |||| ||||||| ||||||  ||||||||| |||||||  || | ||||||||||||||||||||||||    
T  27922605 aatgaactttgaagttcccaaattggaggtgttgaacttgtcatatacaaatgttgatgatgaagcactttatatgatctcaaagagttgttgtgggctt 27922506  T
Q  234 ttg 236  Q
    |||    
T  27922505 ttg 27922503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 238
Target Start/End: Complemental strand, 32151405 - 32151294
Alignment:
Q  127 tgcgtggaatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttg 226  Q
    |||||||||||||||| || ||||| ||  ||||||| || | |||||||  ||||||  |||||||| || ||||| |||| ||||||||||||||| |    
T  32151405 tgcgtggaatgaacttcgaagtttccaatctggaggtgttaaacttgtcatgtacaaggtttgatgatgaaacactctatgtgatctcaaagagttgtag 32151306  T
Q  227 tgggcttttgca 238  Q
    ||||||||||||    
T  32151305 tgggcttttgca 32151294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 224
Target Start/End: Original strand, 17636402 - 17636493
Alignment:
Q  133 gaatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgt 224  Q
    ||||||||||||| ||| | ||||||||||| |||| ||||||||| ||| ||||||| ||| ||||| |  |||| |||||||||||||||    
T  17636402 gaatgaactttgaagttcccaaattggaggtgttgaacttgtcacaaacaggagttgacgatgaagcattgtatgtgatctcaaagagttgt 17636493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 66 - 238
Target Start/End: Original strand, 51120827 - 51120999
Alignment:
Q  66 gttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggaggtat 165  Q
    |||||| ||||| ||||||| |||||||| ||||||||  | ||||||| | |||||||  ||| ||||||||||||||| |||   ||||||||||| |    
T  51120827 gttttatggagatgttgtaacattagacacttgaacttcaccggttgttcaagagtgaaactgcatggaatgaactttgaagttctcaaattggaggtgt 51120926  T
Q  166 tgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgca 238  Q
    ||| |||||| |||||||||||||||||| ||  |||  |||||||||||||||||||| |||||||||||||    
T  51120927 tgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgca 51120999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 62 - 238
Target Start/End: Original strand, 13470662 - 13470838
Alignment:
Q  62 tcaagttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggag 161  Q
    |||||||||||||| | ||||||||||||| ||||||||||||||   ||||  |  ||||||  | | |||||||||||||| |||| | ||  |||||    
T  13470662 tcaagttttaaggatatgttgtaagattaggcatttgaacttagcctattgtaaaaaagtgaagctacttggaatgaactttgttgttcccaatctggag 13470761  T
Q  162 gtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgca 238  Q
    || |||| ||||||| ||||||  ||| |||||||| ||||| || | |||||||||| ||||||||||||||||||    
T  13470762 gtgttgaacttgtcaaatacaaaggttaatgataaaacactctatatgatctcaaagaattgttgtgggcttttgca 13470838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 62 - 238
Target Start/End: Original strand, 51113711 - 51113887
Alignment:
Q  62 tcaagttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggag 161  Q
    ||||||||||| |||| ||||||| ||||| |||||||| ||||||   |||| |  | ||||  | | ||||||||||||||| | | | ||| |||||    
T  51113711 tcaagttttaaagagatgttgtaaaattaggcatttgaaattagcttactgttcaaaactgaagctacttggaatgaactttgaagctcccaaactggag 51113810  T
Q  162 gtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgca 238  Q
    || ||   ||||||| ||||||  ||||||||| || ||||| |||| ||||| |||||||||||||||||||||||    
T  51113811 gtgttagacttgtcaaatacaatggttgatgatgaaacactctatgtgatctcgaagagttgttgtgggcttttgca 51113887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 238
Target Start/End: Original strand, 51764372 - 51764546
Alignment:
Q  64 aagttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggaggt 163  Q
    |||||||||||||| ||| ||||||||| ||||||||| || | |  |||| | |||||||  | | ||||||||||||||  ||| | ||  |||||||    
T  51764372 aagttttaaggagatgttctaagattaggcatttgaacctatccgaatgttcaagagtgaagctacttggaatgaactttgcagttccgaagctggaggt 51764471  T
Q  164 attgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgca 238  Q
     ||   |||||||  ||||| ||||||||||||| ||||| |||  |||||||||| |||||| |||||||||||    
T  51764472 gttagacttgtcatttacaaaagttgatgataaaacactctatgcgatctcaaagaattgttgcgggcttttgca 51764546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 514774 - 514834
Alignment:
Q  178 atacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgca 238  Q
    |||||||||| || ||| ||||||| ||||| ||||| |||||||| ||||||||||||||    
T  514774 atacaagagtcgacgatgaagcacttcatgtgatctcgaagagttgctgtgggcttttgca 514834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 219
Target Start/End: Original strand, 27005797 - 27005859
Alignment:
Q  157 tggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaaga 219  Q
    ||||||| |||| |||||||||||||||| ||||| ||| | ||||  |||||||||||||||    
T  27005797 tggaggtcttgaacttgtcacatacaagaattgataatacaacactttatgtaatctcaaaga 27005859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 100
Target Start/End: Complemental strand, 1657438 - 1657378
Alignment:
Q  40 acatatctgacgaaggtgttattcaagttttaaggagacgttgtaagattagacatttgaa 100  Q
    |||||||||| |||||| || |||| ||||||| || | ||||||| ||||||||||||||    
T  1657438 acatatctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacatttgaa 1657378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 4 - 236
Target Start/End: Complemental strand, 32267699 - 32267470
Alignment:
Q  4 ccaatttgcagctgcttgatgtgagagaatgcgaccacatatctgacgaaggtgttattcaagttttaaggagacgttgtaagattagacatttgaactt 103  Q
    |||||||||||||||||||| ||||  | ||    | ||||||||| |||||| |  ||||| ||||||||| | ||||||| |||||||||||||||||    
T  32267699 ccaatttgcagctgcttgatttgagcaattgttgtcgcatatctgaagaaggtatcgttcaatttttaaggatatgttgtaacattagacatttgaactt 32267600  T
Q  104 agctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactc 203  Q
    | |    |||| |  ||||||    |  | |||||||||||| ||| | |||||||||||||||| ||||||||| |||| |||||||||| |||||||     
T  32267599 atcccagtgttcaacagtgaa---actagaaatgaactttgaagttcccaaattggaggtattgaacttgtcacaaacaatagttgatgatgaagcactt 32267503  T
Q  204 catgtaatctcaaagagttgttgtgggcttttg 236  Q
     || | |||||||||||||||||||||||||||    
T  32267502 tatatgatctcaaagagttgttgtgggcttttg 32267470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 41 - 234
Target Start/End: Original strand, 41889463 - 41889656
Alignment:
Q  41 catatctgacgaaggtgttattcaagttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaac 140  Q
    ||||| ||| |||||| ||| |||||||||||||| | ||||||| |||||| ||||||||||| | || |||| |  ||||||  | | || |||||||    
T  41889463 catatttgatgaaggtattactcaagttttaaggatatgttgtaacattagatatttgaacttatccggatgttcaatagtgaagctacttgaaatgaac 41889562  T
Q  141 tttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttt 234  Q
    ||| | ||| | ||||||||||| |||| ||| ||| |||||| |||||||||| || ||||  ||   ||||||||||||||||| |||||||    
T  41889563 tttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgatgatgaaacactttataagatctcaaagagttgttgcgggcttt 41889656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 139 - 236
Target Start/End: Original strand, 41901542 - 41901639
Alignment:
Q  139 actttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttg 236  Q
    ||||||| ||| | ||| ||||||| |||| ||||||| |||||| |||||||||| |||||||  || | |||||||||||||||||||| ||||||    
T  41901542 actttgaagttcccaaactggaggtgttgaacttgtcatatacaaaagttgatgatgaagcactttatatgatctcaaagagttgttgtggacttttg 41901639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 238
Target Start/End: Complemental strand, 37937948 - 37937880
Alignment:
Q  170 cttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgca 238  Q
    |||| ||||||||||| |||||||| || ||||| |||||||||||||||  ||| |||||||||||||    
T  37937948 cttgacacatacaagaattgatgatcaaacactctatgtaatctcaaagatgtgtcgtgggcttttgca 37937880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 41901407 - 41901510
Alignment:
Q  1 tccccaatttgcagctgcttgatgtgagagaatgcgaccacatatctgacgaaggtgttattcaagttttaaggagacgttgtaagattagacatttgaa 100  Q
    ||||||||||||||||||||||| ||||  | ||    | ||||| ||| |||||| || |||||||||||||||   ||||||| ||||||||||||||    
T  41901407 tccccaatttgcagctgcttgatttgagcaattgttgtcgcatatttgaagaaggtattgttcaagttttaaggatgtgttgtaacattagacatttgaa 41901506  T
Q  101 ctta 104  Q
    ||||    
T  41901507 ctta 41901510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 236
Target Start/End: Original strand, 38267594 - 38267660
Alignment:
Q  170 cttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttg 236  Q
    |||| |||||||||||||||||||| |  ||||| |||||||||||||||  ||  |||||||||||    
T  38267594 cttgacacatacaagagttgatgatgacacactctatgtaatctcaaagacgtgccgtgggcttttg 38267660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 66 - 238
Target Start/End: Original strand, 45245019 - 45245191
Alignment:
Q  66 gttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggaggtat 165  Q
    |||||||||||| ||||||| ||||| ||||| ||||||| | | |||| | || || | || |||||||| |||||||| ||| ||||| | ||||| |    
T  45245019 gttttaaggagatgttgtaacattaggcatttaaacttagtttgctgttcaagactggaattacgtggaataaactttgaagttccaaaacttgaggtgt 45245118  T
Q  166 tgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgca 238  Q
    |||  |||||| | ||||  ||||||||| || |||||||||| ||||||||||||||| |||||||||||||    
T  45245119 tgaatttgtcagagacaatggttgatgatgaaacactccatgtgatctcaaagagttgtcgtgggcttttgca 45245191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 235
Target Start/End: Original strand, 1037572 - 1037767
Alignment:
Q  40 acatatctgacgaaggtgttattcaagttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaa 139  Q
    |||||||||| |||||| ||  | |||||||||||||| |||||||| ||||||||||||| |||||    | || | |||||||  | | | |||| ||    
T  1037572 acatatctgaagaaggtatttgtgaagttttaaggagatgttgtaaggttagacatttgaatttagcctactattcaagagtgaaactacttagaataaa 1037671  T
Q  140 ctttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggctttt 235  Q
    |||| | ||| |  |||| ||||| || | ||||||||||||| | ||||||||| || ||||| || | |||||||||| |||||||||||||||    
T  1037672 ctttaaagttcctgaattagaggtgtttaacttgtcacatacatgtgttgatgatgaaacactctatatgatctcaaagaattgttgtgggctttt 1037767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 32785799 - 32785856
Alignment:
Q  159 gaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaa 216  Q
    ||||| |||| |||||||||||||||| |||||||| |||||||  |||| |||||||    
T  32785799 gaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 32785856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 45 - 203
Target Start/End: Complemental strand, 7977764 - 7977606
Alignment:
Q  45 tctgacgaaggtgttattcaagttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttg 144  Q
    ||||| |||||| ||  |||||||||||||||| ||||||| ||||||||||| ||| ||||  |||||| | | |||||| | ||||||||||| || |    
T  7977764 tctgaagaaggtattggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgaatctacgtggaatgaaattcg 7977665  T
Q  145 atgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactc 203  Q
    | ||||  ||| | ||||  |||| |||||||||||||| ||||||||||||| |||||    
T  7977664 acgtttgcaaactcgaggctttgaacttgtcacatacaacagttgatgataaaacactc 7977606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 62 - 238
Target Start/End: Original strand, 15092081 - 15092257
Alignment:
Q  62 tcaagttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggag 161  Q
    |||||||||||||| | ||| |||| ||| ||||||||||||| |||| |||||| | |||||  | | ||||||||||||||  ||| |  |  |||||    
T  15092081 tcaagttttaaggaaatgttataagcttaaacatttgaacttaactggatgtttaagtgtgaaactacatggaatgaactttgcagttcccgagctggag 15092180  T
Q  162 gtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgca 238  Q
    || ||||  |||||| | ||||  ||| |||||||| ||||| |||  |||||||||| ||||||||||||||||||    
T  15092181 gtgttgaatttgtcagaaacaaaggttaatgataaaacactctatgcgatctcaaagaattgttgtgggcttttgca 15092257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 238
Target Start/End: Complemental strand, 10614762 - 10614586
Alignment:
Q  62 tcaagttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggag 161  Q
    |||||||||||||| | ||||||||||||| ||||||||||||||   ||||  |  ||||||  | | |||||||||| ||| |||| | ||  |||||    
T  10614762 tcaagttttaaggatatgttgtaagattaggcatttgaacttagcctattgtaaaaaagtgaagctacttggaatgaacgttgttgttcccaatctggag 10614663  T
Q  162 gtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgca 238  Q
    || |||| ||||||| |||| |  ||| |||||||| ||||| |||| ||||| ||||  ||| |||||||||||||    
T  10614662 gtgttgaacttgtcaaatacgaaggttaatgataaaacactctatgtgatctcgaagaactgtagtgggcttttgca 10614586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 62 - 238
Target Start/End: Complemental strand, 6432330 - 6432154
Alignment:
Q  62 tcaagttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggag 161  Q
    |||||||||||||||| |||||||  ||| |||||||||||||||   |||| ||  ||||||  | | ||||||||||||||| ||| | ||  || ||    
T  6432330 tcaagttttaaggagatgttgtaaacttaaacatttgaacttagcctattgtataaaagtgaagctacatggaatgaactttgaagttcccaagctgaag 6432231  T
Q  162 gtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgca 238  Q
    || |||| ||||||| ||||||| ||||||||| || ||||  |||| |||| ||||| ||||||||||||| ||||    
T  6432230 gtgttgaacttgtcaaatacaagcgttgatgatgaaacactttatgtgatcttaaagaattgttgtgggcttctgca 6432154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 43 - 238
Target Start/End: Original strand, 11936186 - 11936381
Alignment:
Q  43 tatctgacgaaggtgttattcaagttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactt 142  Q
    ||||||| |||||| || |||| ||||||| || | ||||||| |||||||||||||| ||| || | |||| | || ||||  | |||  | |||||||    
T  11936186 tatctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacatttgaatttaactcgctgttcaagactgaagctacgtacattgaactt 11936285  T
Q  143 tgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgca 238  Q
    ||| ||| | ||| ||||||| |||  |||||||  |||||||||||| |||||| ||||| ||   ||||||||||||||| |||||||||||||    
T  11936286 tgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgataaatcactctattggatctcaaagagttgtagtgggcttttgca 11936381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 43 - 238
Target Start/End: Original strand, 11948166 - 11948361
Alignment:
Q  43 tatctgacgaaggtgttattcaagttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactt 142  Q
    ||||||| |||||| || |||| ||||||| || | ||||||| |||||||||||||| ||| || | |||| | || ||||  | |||  | |||||||    
T  11948166 tatctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacatttgaatttaactcgctgttcaagactgaagctacgtacattgaactt 11948265  T
Q  143 tgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgca 238  Q
    ||| ||| | ||| ||||||| |||  |||||||  |||||||||||| |||||| ||||| ||   ||||||||||||||| |||||||||||||    
T  11948266 tgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgataaatcactctattggatctcaaagagttgtagtgggcttttgca 11948361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 62 - 236
Target Start/End: Complemental strand, 6403029 - 6402855
Alignment:
Q  62 tcaagttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggag 161  Q
    |||||||||||||||| ||||||| ||||| |||||||||||| |||| |||| | |||||||  | | |||||| |||||||  ||| |  || | ||     
T  6403029 tcaagttttaaggagatgttgtaacattaggcatttgaacttaactgggtgttcaagagtgaagctacttggaataaactttgcagttccccaactagaa 6402930  T
Q  162 gtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttg 236  Q
    || |||| ||||||| |||| |  ||||||||| || ||||| |||| |||||||||| |||| |||||||||||    
T  6402929 gtgttgaacttgtcagatacgaaggttgatgatgaaacactctatgtgatctcaaagaattgtagtgggcttttg 6402855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 236
Target Start/End: Original strand, 6585171 - 6585341
Alignment:
Q  66 gttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggaggtat 165  Q
    |||||||||||| ||| ||| ||||| |||||||||||  |||| |||| | |||||||  | | |||||| ||||||   ||| |  | ||||||||||    
T  6585171 gttttaaggagatgttttaatattaggcatttgaactttactgggtgttcaagagtgaagctacttggaataaactttttagttacccagttggaggtat 6585270  T
Q  166 tgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttg 236  Q
    ||| ||||||| ||||||  ||||||||| || ||||| |||| |||||||||||||||| || |||||||    
T  6585271 tgaacttgtcagatacaaaggttgatgatgaaacactctatgtgatctcaaagagttgttctgcgcttttg 6585341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 62 - 236
Target Start/End: Complemental strand, 7119326 - 7119152
Alignment:
Q  62 tcaagttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggag 161  Q
    |||||||||||||||| ||| |||||||| |||||||||||||||    |||| | |||||||  | | |||||||||||||| ||||    |  |||||    
T  7119326 tcaagttttaaggagatgttctaagattaaacatttgaacttagcccactgttcaagagtgaagctacttggaatgaactttgttgttcaccagctggag 7119227  T
Q  162 gtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttg 236  Q
    || |||| ||||||| |||| |  ||||||||| || |||||||||| ||||| |||| |||||| |||||||||    
T  7119226 gtgttgaacttgtcagatacgaaggttgatgatgaaacactccatgtgatctcgaagaattgttgcgggcttttg 7119152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 62 - 236
Target Start/End: Complemental strand, 7131804 - 7131630
Alignment:
Q  62 tcaagttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggag 161  Q
    |||||||||||||||| ||| |||||||| |||||||||||||||    |||| | |||||||  | | |||||||||||||| ||||    |  |||||    
T  7131804 tcaagttttaaggagatgttctaagattaaacatttgaacttagcccactgttcaagagtgaagctacttggaatgaactttgttgttcgccagctggag 7131705  T
Q  162 gtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttg 236  Q
    || |||| ||||||| |||| |  ||||||||| || |||||||||| ||||| |||| |||||| |||||||||    
T  7131704 gtgttgaacttgtcagatacgaaggttgatgatgaaacactccatgtgatctcgaagaattgttgcgggcttttg 7131630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 238
Target Start/End: Complemental strand, 6395033 - 6394857
Alignment:
Q  62 tcaagttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggag 161  Q
    ||||||||||| || | |||||||| ||| ||||||||||||||||   |||| |  ||||||  | | ||||||||||||||  ||| |  |  |||||    
T  6395033 tcaagttttaaagaaatgttgtaagcttaaacatttgaacttagctttctgttcaaaagtgaaactacatggaatgaactttgcagttcccgagctggag 6394934  T
Q  162 gtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgca 238  Q
    || |||| ||||||| ||||||| ||||||||| || | ||   ||| |||||||||| ||||||||||||||||||    
T  6394933 gtgttgaacttgtcaaatacaagcgttgatgatgaaactctttctgtgatctcaaagaattgttgtgggcttttgca 6394857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 9411582 - 9411476
Alignment:
Q  1 tccccaatttgcagctgcttgatgtgagagaatgcgaccacatatctgacgaaggtgttattcaagttttaaggagacgttgtaagattagacatttgaa 100  Q
    ||||||||||||||||||||||| |||| | |||     |||||||| |||||||| || | || |||||||||||| || |||| ||||||||||||||    
T  9411582 tccccaatttgcagctgcttgatttgagcggatgttgtaacatatctaacgaaggtattttgcaggttttaaggagatgtggtaacattagacatttgaa 9411483  T
Q  101 cttagct 107  Q
    | |||||    
T  9411482 cctagct 9411476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 238
Target Start/End: Complemental strand, 6423291 - 6423210
Alignment:
Q  157 tggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgca 238  Q
    ||||||| |||| ||||||| |||||||||||   |||||| ||||| |||  ||||||||||||||||||||| |||||||    
T  6423291 tggaggtgttgaacttgtcaaatacaagagttagcgataaaacactctatgcgatctcaaagagttgttgtgggattttgca 6423210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 235
Target Start/End: Original strand, 6594536 - 6594709
Alignment:
Q  62 tcaagttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggag 161  Q
    |||||||||||||||| ||| |||||||| ||||||| ||||| | || |||| | |||||||  | | |||||| ||||||   ||| | ||| |||||    
T  6594536 tcaagttttaaggagatgttataagattacacatttgtacttatccgggtgttcaagagtgaagctacatggaataaactttttagttcccaaactggag 6594635  T
Q  162 gtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggctttt 235  Q
    || |||  ||||||| |||||   ||||||||| |  |||| | ||| |||||||||| |||||||||||||||    
T  6594636 gtgttgtacttgtcaaatacagaggttgatgatgagacactacgtgtgatctcaaagaattgttgtgggctttt 6594709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 10579761 - 10579840
Alignment:
Q  157 tggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttg 236  Q
    ||||||| |||| ||||||| |||||| ||||||||||||| ||||| ||   |||||||||| ||||||| ||||||||    
T  10579761 tggaggtgttgaacttgtcatatacaaaagttgatgataaaacactctattcgatctcaaagaattgttgtcggcttttg 10579840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 224
Target Start/End: Complemental strand, 28935146 - 28935056
Alignment:
Q  134 aatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgt 224  Q
    |||||| ||||||||| |  || | ||||| |||| ||||||||||||||||||||| ||| ||||||||  ||| || ||||||||||||    
T  28935146 aatgaagtttgatgttccccaactcgaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgt 28935056  T

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Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 238
Target Start/End: Complemental strand, 6416135 - 6415959
Alignment:
Q  62 tcaagttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggag 161  Q
    ||||||||||| || | ||||||||||| | ||||||||||||||   ||||  |  ||||||  | | ||||||| ||||||  ||| | ||  |||||    
T  6416135 tcaagttttaaagatatgttgtaagattgggcatttgaacttagccttttgtaaaaaagtgaagctacatggaatggactttgtagttcccaacctggag 6416036  T
Q  162 gtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgca 238  Q
    || |||| ||||||| ||||||  ||| |||||||| | ||| |||| |||||||||| |||| | |||||||||||    
T  6416035 gtgttgaacttgtcaaatacaaaggttaatgataaaactctctatgtgatctcaaagaattgtagcgggcttttgca 6415959  T

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Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 238
Target Start/End: Complemental strand, 6410106 - 6409999
Alignment:
Q  131 tggaatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtggg 230  Q
    ||||||||||||||| ||| | ||  || |||| |||| || |||| ||||||| ||||||||| || | ||  |||| |||||||||| ||||||| ||    
T  6410106 tggaatgaactttgaagttcccaagctgaaggtgttgaactagtcaaatacaagcgttgatgatgaaactctttatgtgatctcaaagaattgttgtcgg 6410007  T
Q  231 cttttgca 238  Q
    ||||||||    
T  6410006 cttttgca 6409999  T

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Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 237
Target Start/End: Complemental strand, 14820862 - 14820687
Alignment:
Q  62 tcaagttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggag 161  Q
    ||||| |||||||| | |||||||| ||| ||||||||||||||    ||||| |||||||||  | | |||||| |||||||  ||| | || || |||    
T  14820862 tcaaggtttaaggaaatgttgtaagcttaaacatttgaacttagaattttgttcaggagtgaaactacatggaattaactttgcagttcccaagttagag 14820763  T
Q  162 gtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgc 237  Q
    || |||| ||| ||| ||||||  |||||| || || ||||  || | ||||| |||| |||||||||||||||||    
T  14820762 gtgttgaacttatcaaatacaaaggttgataatgaaacactttatatgatctccaagaattgttgtgggcttttgc 14820687  T

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Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 8913914 - 8913955
Alignment:
Q  62 tcaagttttaaggagacgttgtaagattagacatttgaactt 103  Q
    |||||||||||| ||| |||||||||||| ||||||||||||    
T  8913914 tcaagttttaagaagatgttgtaagattaaacatttgaactt 8913955  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 223
Target Start/End: Complemental strand, 12102366 - 12102274
Alignment:
Q  131 tggaatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttg 223  Q
    |||| |||||||||| ||| | ||| ||||||| |||| ||||||||||||| |||||||| |  ||| |||| || | || |||||||||||    
T  12102366 tggattgaactttgaagttcccaaactggaggtgttgaacttgtcacatacatgagttgataacgaagaactctatctgatttcaaagagttg 12102274  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 238
Target Start/End: Original strand, 29658929 - 29659002
Alignment:
Q  165 ttgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgca 238  Q
    |||| ||||||| |||| | |||||||||||||||||||||| | || |||| |||||||||||| ||||||||    
T  29658929 ttgaacttgtcatataccaaagttgatgataaagcactccatatcatatcaacgagttgttgtggccttttgca 29659002  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 230
Target Start/End: Complemental strand, 52082678 - 52082582
Alignment:
Q  134 aatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtggg 230  Q
    |||||||||| | ||||| ||||||||||| |||| ||||||| | |||| | |||||||| || || |  |||| |||||||||||||||||||||    
T  52082678 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 52082582  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 236
Target Start/End: Original strand, 19468373 - 19468603
Alignment:
Q  3 cccaatttgcagctgcttgatgtgagagaatgcgaccacatatctgacgaaggtgttattcaagttttaaggagacgttgtaagattagacatttgaact 102  Q
    ||||||||||||||||||||| |||    |||| |||||||||| ||   |||  ||  |||||||||||||||  ||| ||| ||||| ||||| ||||    
T  19468373 cccaatttgcagctgcttgatttgaactcatgcaaccacatatcgga---aggcatttgtcaagttttaaggaggtgttctaatattaggcatttaaact 19468469  T
Q  103 tagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcact 202  Q
    ||||    |||| | |||||||| | | |||| |||||||||  ||| | ||  ||||||| ||||  |||||| ||||||  ||||||||| || ||||    
T  19468470 tagcccactgttcaagagtgaatctacttggagtgaactttgtagttcccaagctggaggtgttgaagttgtcagatacaaaggttgatgatgaaacact 19468569  T
Q  203 ccatgtaatctcaaagagttgttgtgggcttttg 236  Q
      |||| ||||||||||  |||||||| ||||||    
T  19468570 ttatgtgatctcaaagaactgttgtggacttttg 19468603  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 235
Target Start/End: Complemental strand, 7554554 - 7554484
Alignment:
Q  165 ttgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggctttt 235  Q
    |||| ||| ||| ||||||| ||||||||| |||||||| || | ||||||||||||||| |||| |||||    
T  7554554 ttgaacttatcatatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggactttt 7554484  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 238
Target Start/End: Original strand, 29718956 - 29719029
Alignment:
Q  165 ttgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgca 238  Q
    |||| ||||||| |||| |  |||||||||||| |||||||| | || |||| |||||||||||| ||||||||    
T  29718956 ttgaacttgtcatataccaacgttgatgataaatcactccatatcatatcaacgagttgttgtggccttttgca 29719029  T

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Target: scaffold0807 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 1394 - 1438
Alignment:
Q  62 tcaagttttaaggagacgttgtaagattagacatttgaacttagc 106  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||    
T  1394 tcaagttttaaggagatgttataagattagacatttgaacttagc 1438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 88980 - 88943
Alignment:
Q  67 ttttaaggagacgttgtaagattagacatttgaactta 104  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  88980 ttttaaggagatgttgtaagattagacatttgaactta 88943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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