View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18144_low_2 (Length: 464)

Name: NF18144_low_2
Description: NF18144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18144_low_2
NF18144_low_2
[»] chr6 (11 HSPs)
chr6 (18-451)||(30952207-30952630)
chr6 (207-451)||(30985177-30985421)
chr6 (207-451)||(30991341-30991585)
chr6 (247-446)||(31016512-31016709)
chr6 (287-446)||(15521465-15521622)
chr6 (247-371)||(15494615-15494738)
chr6 (18-56)||(28583618-28583656)
chr6 (70-111)||(12321580-12321621)
chr6 (82-115)||(19412403-19412436)
chr6 (71-127)||(19412616-19412672)
chr6 (79-111)||(33485083-33485115)
[»] chr4 (9 HSPs)
chr4 (71-127)||(51902047-51902103)
chr4 (81-115)||(51754210-51754244)
chr4 (69-115)||(54554396-54554442)
chr4 (82-127)||(1952971-1953016)
chr4 (82-115)||(4431305-4431338)
chr4 (82-127)||(13032888-13032933)
chr4 (82-127)||(31592530-31592575)
chr4 (82-127)||(40450259-40450304)
chr4 (71-127)||(7086066-7086122)
[»] chr2 (13 HSPs)
chr2 (70-111)||(18250888-18250929)
chr2 (71-115)||(5969738-5969782)
chr2 (82-127)||(11115261-11115306)
chr2 (70-115)||(16670512-16670557)
chr2 (82-127)||(33563733-33563778)
chr2 (82-127)||(39341267-39341312)
chr2 (82-127)||(39341366-39341411)
chr2 (82-115)||(44610940-44610973)
chr2 (83-127)||(5558223-5558267)
chr2 (79-115)||(19686187-19686223)
chr2 (82-126)||(32650095-32650139)
chr2 (83-115)||(33441518-33441550)
chr2 (79-115)||(38937516-38937552)
[»] chr1 (8 HSPs)
chr1 (82-127)||(51809757-51809802)
chr1 (81-115)||(31648596-31648630)
chr1 (82-127)||(972842-972887)
chr1 (81-117)||(8930356-8930392)
chr1 (71-115)||(26097027-26097071)
chr1 (79-115)||(38742389-38742425)
chr1 (79-115)||(43635848-43635884)
chr1 (79-111)||(52083598-52083630)
[»] chr7 (4 HSPs)
chr7 (71-115)||(8174897-8174941)
chr7 (71-115)||(9553413-9553457)
chr7 (71-111)||(11058170-11058210)
chr7 (82-127)||(19336044-19336089)
[»] chr3 (10 HSPs)
chr3 (71-115)||(46597508-46597552)
chr3 (81-115)||(46596108-46596142)
chr3 (70-115)||(24909393-24909438)
chr3 (82-115)||(33898283-33898316)
chr3 (70-115)||(46610022-46610067)
chr3 (79-115)||(10615288-10615324)
chr3 (71-115)||(17261038-17261082)
chr3 (71-127)||(18946030-18946086)
chr3 (71-115)||(35434072-35434116)
chr3 (79-111)||(37975987-37976019)
[»] chr5 (5 HSPs)
chr5 (80-115)||(11438352-11438387)
chr5 (82-127)||(7899936-7899981)
chr5 (70-115)||(37274761-37274806)
chr5 (79-115)||(15061831-15061867)
chr5 (71-115)||(15615116-15615160)
[»] scaffold0933 (1 HSPs)
scaffold0933 (79-117)||(2726-2764)
[»] chr8 (3 HSPs)
chr8 (82-127)||(45530749-45530795)
chr8 (82-118)||(25653714-25653750)
chr8 (79-115)||(27164666-27164702)
[»] scaffold0289 (1 HSPs)
scaffold0289 (82-115)||(9933-9966)
[»] scaffold0040 (1 HSPs)
scaffold0040 (70-111)||(64521-64562)
[»] scaffold0001 (1 HSPs)
scaffold0001 (82-127)||(53533-53578)
[»] scaffold0210 (1 HSPs)
scaffold0210 (71-111)||(4725-4765)


Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 18 - 451
Target Start/End: Complemental strand, 30952630 - 30952207
Alignment:
Q  18 ggttttatgaagaatcttacttttataaggaccgaatccnnnnnnnnnnnntattaccggaggcaaaaccaaaaataccctatattacagggggtaaaac 117  Q
    ||||||||||||||| ||||||||| ||||| |||||||            ||||| ||||||||||||||||| |||||||||||||||||| ||||||    
T  30952630 ggttttatgaagaattttacttttacaaggatcgaatccaaaaaaaaaatatattatcggaggcaaaaccaaaagtaccctatattacagggg-taaaac 30952532  T
Q  118 atcgttaaccnnnnnnnnnnnnatgaacttcatgtccnnnnnnnatctatggcaaatgggcacttgttaagaaaagtttaannnnnnnnaaatggtgcat 217  Q
    ||| ||||              |||||||||||||||       ||||| |||||||||||||||||||||||||||||||        |||||||||||    
T  30952531 atcattaa--------atttttatgaacttcatgtcctttttttatctacggcaaatgggcacttgttaagaaaagtttaattttttgtaaatggtgcat 30952440  T
Q  218 acaacatccttaaaactttagaaattgagttattaccaatagcgagtttccccttccaattccacgggcctgcaacaattagtcgtgaaagaaaagacga 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30952439 acaacatccttaaaactttagaaattgagttattaccaatagcgagtttccccttccaattccacgggcctgcaacaattagtcgtgaaagaaaagacga 30952340  T
Q  318 gttagcatttgttctaattctaggatagtattctacttgtgtataacaaacataaaacatgtacacatatgcactttcaccaaaggcttggcagagaaag 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  30952339 gttagcatttgttctaattctaggatagtattctacttgtgtataacaaacat-aaacatgtacacatatgcactttcaccaaaggcttggcagagaaag 30952241  T
Q  418 taagcaatagcagatatagcatatggcttgatgt 451  Q
    |||| |||||||||||||||||||||||||||||    
T  30952240 taagaaatagcagatatagcatatggcttgatgt 30952207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 207 - 451
Target Start/End: Complemental strand, 30985421 - 30985177
Alignment:
Q  207 aaatggtgcatacaacatccttaaaactttagaaatt--gagttattaccaatagcgagtttccccttccaattccacgggcctgcaacaattagtcgtg 304  Q
    ||||||||||| ||||||||||||||||||||||| |  || |||||||||||  ||| ||||| ||||||||||||  | |||||||||||||||||||    
T  30985421 aaatggtgcatgcaacatccttaaaactttagaaagttcgatttattaccaatgacgaatttcctcttccaattccattgtcctgcaacaattagtcgtg 30985322  T
Q  305 aaagaaaagacgagttagcatttgttctaattctaggatagtattctacttgtgtataacaaacataaaacatgtacacatatgcactttcaccaaaggc 404  Q
    ||||||||||| |||||||||| |||||||||| |||| | |||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||    
T  30985321 aaagaaaagaccagttagcatt-gttctaattcaaggagaatattctacttgtgtataataaacataaa-catgtacacatatgcattttcaccaaaggc 30985224  T
Q  405 ttggcagagaaagtaagcaatagcagatatagcatatggcttgatgt 451  Q
     | |||||||||| ||||||||||||||| |||||||||||| ||||    
T  30985223 ctagcagagaaagcaagcaatagcagatacagcatatggcttaatgt 30985177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 207 - 451
Target Start/End: Complemental strand, 30991585 - 30991341
Alignment:
Q  207 aaatggtgcatacaacatccttaaaactttagaaatt--gagttattaccaatagcgagtttccccttccaattccacgggcctgcaacaattagtcgtg 304  Q
    ||||||||||| ||||||||||||||||||||||| |  || |||||||||||  ||| ||||| ||||||||||||  | |||||||||||||||||||    
T  30991585 aaatggtgcatgcaacatccttaaaactttagaaagttcgatttattaccaatgacgaatttcctcttccaattccattgtcctgcaacaattagtcgtg 30991486  T
Q  305 aaagaaaagacgagttagcatttgttctaattctaggatagtattctacttgtgtataacaaacataaaacatgtacacatatgcactttcaccaaaggc 404  Q
    ||||||||||| |||||||||| |||||||||| |||| | |||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||    
T  30991485 aaagaaaagaccagttagcatt-gttctaattcaaggagaatattctacttgtgtataataaacataaa-catgtacacatatgcattttcaccaaaggc 30991388  T
Q  405 ttggcagagaaagtaagcaatagcagatatagcatatggcttgatgt 451  Q
     | |||||||||| ||||||||||||||| |||||||||||| ||||    
T  30991387 ctagcagagaaagcaagcaatagcagatacagcatatggcttaatgt 30991341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 247 - 446
Target Start/End: Complemental strand, 31016709 - 31016512
Alignment:
Q  247 ttattaccaatagcgagtttccccttccaattccacgggcctgcaacaattagtcgtgaaagaaaagacgagttagcatttgttctaattctaggatagt 346  Q
    |||||||||||  ||||||||| |||||| ||||| ||| ||||||||||||||| | ||| ||||| |||||||||| |||||||||||| |||| |||    
T  31016709 ttattaccaatgccgagtttcctcttccagttccatgggtctgcaacaattagtcataaaaaaaaagtcgagttagca-ttgttctaattcaaggagagt 31016611  T
Q  347 attctacttgtgtataacaaacataaaacatgtacacatatgcactttcaccaaaggcttggcagagaaagtaagcaatagcagatatagcatatggctt 446  Q
    |||||||| ||||||||    ||| |||||||||||  |||||||||||||||||||||||||||| ||| ||||||||| ||||||||||| |||||||    
T  31016610 attctactagtgtataaatggcat-aaacatgtacatttatgcactttcaccaaaggcttggcagataaactaagcaatatcagatatagcaaatggctt 31016512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 287 - 446
Target Start/End: Original strand, 15521465 - 15521622
Alignment:
Q  287 ctgcaacaattagtcgtgaaagaaaagacgagttagcatttgttctaattctaggatagtattctacttgtgtataacaaacataaaacatgtacacata 386  Q
    |||||| |||||||  |||||| ||| | ||||||||||| |||||||||  || | |||||||||||||||||||||||| ||| | |||||| |  ||    
T  15521465 ctgcaagaattagttatgaaagcaaatatgagttagcatt-gttctaatttgagaagagtattctacttgtgtataacaaatataga-catgtatattta 15521562  T
Q  387 tgcactttcaccaaaggcttggcagagaaagtaagcaatagcagatatagcatatggctt 446  Q
    || ||||||||||||||||||| | |||||||||||| | ||  |||||| |||||||||    
T  15521563 tgaactttcaccaaaggcttggaaaagaaagtaagcacttgcttatatagtatatggctt 15521622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 247 - 371
Target Start/End: Complemental strand, 15494738 - 15494615
Alignment:
Q  247 ttattaccaatagcgagtttccccttccaattccacgggcctgcaacaattagtcgtgaaagaaaagacgagttagcatttgttctaattctaggatagt 346  Q
    |||||||||||| ||||||||  |||||||||||| ||  |||||  ||||||| || |||| ||||| ||||||| ||| ||| |||||| |||  |||    
T  15494738 ttattaccaataacgagtttcttcttccaattccatggagctgcagtaattagttgttaaagcaaagatgagttagtatt-gttttaattcgaggggagt 15494640  T
Q  347 attctacttgtgtataacaaacata 371  Q
    |||||||||||||||||||||||||    
T  15494639 attctacttgtgtataacaaacata 15494615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 28583656 - 28583618
Alignment:
Q  18 ggttttatgaagaatcttacttttataaggaccgaatcc 56  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  28583656 ggttttatgaagaatcttacttttataaggatcgaatcc 28583618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 12321621 - 12321580
Alignment:
Q  70 attaccggaggcaaaaccaaaaataccctatattacaggggg 111  Q
    ||||| |||||||||||||||| |||||||||||||||||||    
T  12321621 attacaggaggcaaaaccaaaagtaccctatattacaggggg 12321580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 115
Target Start/End: Complemental strand, 19412436 - 19412403
Alignment:
Q  82 aaaaccaaaaataccctatattacagggggtaaa 115  Q
    ||||||||||||| ||||||||||||||||||||    
T  19412436 aaaaccaaaaataacctatattacagggggtaaa 19412403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 127
Target Start/End: Original strand, 19412616 - 19412672
Alignment:
Q  71 ttaccggaggcaaaaccaaaaataccctatattacagggggtaaaacatcgttaacc 127  Q
    |||| ||||| ||||| ||||||  |||||||||||||||| |||||||| ||||||    
T  19412616 ttacaggagggaaaactaaaaatgacctatattacagggggcaaaacatcattaacc 19412672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 111
Target Start/End: Original strand, 33485083 - 33485115
Alignment:
Q  79 ggcaaaaccaaaaataccctatattacaggggg 111  Q
    ||||||||||||| |||||||||||||||||||    
T  33485083 ggcaaaaccaaaagtaccctatattacaggggg 33485115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 127
Target Start/End: Complemental strand, 51902103 - 51902047
Alignment:
Q  71 ttaccggaggcaaaaccaaaaataccctatattacagggggtaaaacatcgttaacc 127  Q
    |||| ||||| ||||||||||||| ||||||||||||||||||||||| | ||||||    
T  51902103 ttacaggagggaaaaccaaaaataacctatattacagggggtaaaacaccattaacc 51902047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 115
Target Start/End: Original strand, 51754210 - 51754244
Alignment:
Q  81 caaaaccaaaaataccctatattacagggggtaaa 115  Q
    ||||||||||| |||||||||||||||||||||||    
T  51754210 caaaaccaaaagtaccctatattacagggggtaaa 51754244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 115
Target Start/End: Complemental strand, 54554442 - 54554396
Alignment:
Q  69 tattaccggaggcaaaaccaaaaataccctatattacagggggtaaa 115  Q
    |||||| || ||||||||||||| | |||||||||||||||||||||    
T  54554442 tattacagggggcaaaaccaaaagtgccctatattacagggggtaaa 54554396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 1952971 - 1953016
Alignment:
Q  82 aaaaccaaaaataccctatattacagggggtaaaacatcgttaacc 127  Q
    ||||| ||||||| |||||||||||||||||||| || ||||||||    
T  1952971 aaaacaaaaaataacctatattacagggggtaaagcaccgttaacc 1953016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 115
Target Start/End: Complemental strand, 4431338 - 4431305
Alignment:
Q  82 aaaaccaaaaataccctatattacagggggtaaa 115  Q
    ||||||||||||| ||||||||||||||||||||    
T  4431338 aaaaccaaaaataacctatattacagggggtaaa 4431305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 127
Target Start/End: Complemental strand, 13032933 - 13032888
Alignment:
Q  82 aaaaccaaaaataccctatattacagggggtaaaacatcgttaacc 127  Q
    ||||||||||||  ||||||||||||||||||||||| | ||||||    
T  13032933 aaaaccaaaaatgacctatattacagggggtaaaacaccattaacc 13032888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 127
Target Start/End: Complemental strand, 31592575 - 31592530
Alignment:
Q  82 aaaaccaaaaataccctatattacagggggtaaaacatcgttaacc 127  Q
    ||||| ||||||| ||||||||||||||||||||||| | ||||||    
T  31592575 aaaacaaaaaataacctatattacagggggtaaaacaccattaacc 31592530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 127
Target Start/End: Complemental strand, 40450304 - 40450259
Alignment:
Q  82 aaaaccaaaaataccctatattacagggggtaaaacatcgttaacc 127  Q
    ||||| ||||||| ||||||||||||||||||||||| | ||||||    
T  40450304 aaaacaaaaaataacctatattacagggggtaaaacaccattaacc 40450259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 127
Target Start/End: Original strand, 7086066 - 7086122
Alignment:
Q  71 ttaccggaggcaaaaccaaaaataccctatattacagggggtaaaacatcgttaacc 127  Q
    |||| ||||| ||||| ||||||  ||||||||||||||||||||||| | ||||||    
T  7086066 ttacaggagggaaaacaaaaaatgacctatattacagggggtaaaacaccattaacc 7086122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 18250888 - 18250929
Alignment:
Q  70 attaccggaggcaaaaccaaaaataccctatattacaggggg 111  Q
    ||||| |||||||||||||||||| |||||||||||||||||    
T  18250888 attacaggaggcaaaaccaaaaatgccctatattacaggggg 18250929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 5969782 - 5969738
Alignment:
Q  71 ttaccggaggcaaaaccaaaaataccctatattacagggggtaaa 115  Q
    |||| |||||||||||||||| |||||||||||||||||| ||||    
T  5969782 ttacaggaggcaaaaccaaaagtaccctatattacaggggataaa 5969738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 127
Target Start/End: Complemental strand, 11115306 - 11115261
Alignment:
Q  82 aaaaccaaaaataccctatattacagggggtaaaacatcgttaacc 127  Q
    ||||| ||||||| ||||||||||||||||||||||| | ||||||    
T  11115306 aaaacaaaaaataacctatattacagggggtaaaacaccattaacc 11115261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 16670557 - 16670512
Alignment:
Q  70 attaccggaggcaaaaccaaaaataccctatattacagggggtaaa 115  Q
    ||||| || ||||||||||||| | |||||||||||||||||||||    
T  16670557 attacagggggcaaaaccaaaagtgccctatattacagggggtaaa 16670512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 127
Target Start/End: Complemental strand, 33563778 - 33563733
Alignment:
Q  82 aaaaccaaaaataccctatattacagggggtaaaacatcgttaacc 127  Q
    ||||| ||||||| ||||||||||||||||||||||| | ||||||    
T  33563778 aaaacaaaaaataacctatattacagggggtaaaacaccattaacc 33563733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 127
Target Start/End: Complemental strand, 39341312 - 39341267
Alignment:
Q  82 aaaaccaaaaataccctatattacagggggtaaaacatcgttaacc 127  Q
    ||||||||||||  ||||||||||||||||||||||| | ||||||    
T  39341312 aaaaccaaaaatgacctatattacagggggtaaaacaccattaacc 39341267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 39341366 - 39341411
Alignment:
Q  82 aaaaccaaaaataccctatattacagggggtaaaacatcgttaacc 127  Q
    ||||||||||||  ||||||||||||||||||||||| | ||||||    
T  39341366 aaaaccaaaaatgacctatattacagggggtaaaacaccattaacc 39341411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 115
Target Start/End: Complemental strand, 44610973 - 44610940
Alignment:
Q  82 aaaaccaaaaataccctatattacagggggtaaa 115  Q
    ||||||||||||| ||||||||||||||||||||    
T  44610973 aaaaccaaaaataacctatattacagggggtaaa 44610940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 127
Target Start/End: Complemental strand, 5558267 - 5558223
Alignment:
Q  83 aaaccaaaaataccctatattacagggggtaaaacatcgttaacc 127  Q
    |||||||||||  ||||||||||||||||||||||| | ||||||    
T  5558267 aaaccaaaaatgacctatattacagggggtaaaacaccattaacc 5558223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 19686187 - 19686223
Alignment:
Q  79 ggcaaaaccaaaaataccctatattacagggggtaaa 115  Q
    ||||||||||||| | |||||||||||||||||||||    
T  19686187 ggcaaaaccaaaagtgccctatattacagggggtaaa 19686223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 126
Target Start/End: Original strand, 32650095 - 32650139
Alignment:
Q  82 aaaaccaaaaataccctatattacagggggtaaaacatcgttaac 126  Q
    ||||| ||||||  ||||||||||||||||||||||||| |||||    
T  32650095 aaaacaaaaaatgacctatattacagggggtaaaacatcattaac 32650139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 115
Target Start/End: Complemental strand, 33441550 - 33441518
Alignment:
Q  83 aaaccaaaaataccctatattacagggggtaaa 115  Q
    |||||||||||| ||||||||||||||||||||    
T  33441550 aaaccaaaaataacctatattacagggggtaaa 33441518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 38937516 - 38937552
Alignment:
Q  79 ggcaaaaccaaaaataccctatattacagggggtaaa 115  Q
    ||||||||||||| | |||||||||||||||||||||    
T  38937516 ggcaaaaccaaaagtgccctatattacagggggtaaa 38937552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 82 - 127
Target Start/End: Complemental strand, 51809802 - 51809757
Alignment:
Q  82 aaaaccaaaaataccctatattacagggggtaaaacatcgttaacc 127  Q
    ||||||||||||| ||||||||||||||||||||||| | ||||||    
T  51809802 aaaaccaaaaataacctatattacagggggtaaaacaccattaacc 51809757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 115
Target Start/End: Original strand, 31648596 - 31648630
Alignment:
Q  81 caaaaccaaaaataccctatattacagggggtaaa 115  Q
    |||||||||||||| ||||||||||||||||||||    
T  31648596 caaaaccaaaaataacctatattacagggggtaaa 31648630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 127
Target Start/End: Complemental strand, 972887 - 972842
Alignment:
Q  82 aaaaccaaaaataccctatattacagggggtaaaacatcgttaacc 127  Q
    ||||||||||||  ||||||||||||||||||||||| | ||||||    
T  972887 aaaaccaaaaatgacctatattacagggggtaaaacaccattaacc 972842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 117
Target Start/End: Original strand, 8930356 - 8930392
Alignment:
Q  81 caaaaccaaaaataccctatattacagggggtaaaac 117  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  8930356 caaaaccaaaagtaccttatattacagggggtaaaac 8930392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 26097027 - 26097071
Alignment:
Q  71 ttaccggaggcaaaaccaaaaataccctatattacagggggtaaa 115  Q
    |||| |||||||||||||||| |  ||||||||||||||||||||    
T  26097027 ttacaggaggcaaaaccaaaagtgacctatattacagggggtaaa 26097071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 38742389 - 38742425
Alignment:
Q  79 ggcaaaaccaaaaataccctatattacagggggtaaa 115  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  38742389 ggcaaaatcaaaagtaccctatattacagggggtaaa 38742425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 43635884 - 43635848
Alignment:
Q  79 ggcaaaaccaaaaataccctatattacagggggtaaa 115  Q
    ||||||||||||| | |||||||||||||||||||||    
T  43635884 ggcaaaaccaaaagtgccctatattacagggggtaaa 43635848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 111
Target Start/End: Complemental strand, 52083630 - 52083598
Alignment:
Q  79 ggcaaaaccaaaaataccctatattacaggggg 111  Q
    ||||||||||||||| |||||||||||||||||    
T  52083630 ggcaaaaccaaaaatgccctatattacaggggg 52083598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 8174941 - 8174897
Alignment:
Q  71 ttaccggaggcaaaaccaaaaataccctatattacagggggtaaa 115  Q
    |||| ||| |||||||||||||| |||||||||||||||||||||    
T  8174941 ttacaggatgcaaaaccaaaaatgccctatattacagggggtaaa 8174897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 9553457 - 9553413
Alignment:
Q  71 ttaccggaggcaaaaccaaaaataccctatattacagggggtaaa 115  Q
    |||| |||||||||||||||| | |||||||||||||||||||||    
T  9553457 ttacaggaggcaaaaccaaaagtgccctatattacagggggtaaa 9553413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 11058170 - 11058210
Alignment:
Q  71 ttaccggaggcaaaaccaaaaataccctatattacaggggg 111  Q
    |||| |||||||||||||||| |||||||||||||||||||    
T  11058170 ttacaggaggcaaaaccaaaagtaccctatattacaggggg 11058210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 127
Target Start/End: Complemental strand, 19336089 - 19336044
Alignment:
Q  82 aaaaccaaaaataccctatattacagggggtaaaacatcgttaacc 127  Q
    ||||||||||||  ||||||||||||||||||||||| | ||||||    
T  19336089 aaaaccaaaaatgacctatattacagggggtaaaacaccattaacc 19336044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 46597508 - 46597552
Alignment:
Q  71 ttaccggaggcaaaaccaaaaataccctatattacagggggtaaa 115  Q
    |||| |||||||||||||||| | |||||||||||||||||||||    
T  46597508 ttacaggaggcaaaaccaaaagtgccctatattacagggggtaaa 46597552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 115
Target Start/End: Complemental strand, 46596142 - 46596108
Alignment:
Q  81 caaaaccaaaaataccctatattacagggggtaaa 115  Q
    ||||||||||| |||||||||||||||||||||||    
T  46596142 caaaaccaaaagtaccctatattacagggggtaaa 46596108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 24909438 - 24909393
Alignment:
Q  70 attaccggaggcaaaaccaaaaataccctatattacagggggtaaa 115  Q
    ||||| |||||||||||||||| |  ||||||||||||||||||||    
T  24909438 attacaggaggcaaaaccaaaatttacctatattacagggggtaaa 24909393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 115
Target Start/End: Original strand, 33898283 - 33898316
Alignment:
Q  82 aaaaccaaaaataccctatattacagggggtaaa 115  Q
    ||||||||||||| ||||||||||||||||||||    
T  33898283 aaaaccaaaaataacctatattacagggggtaaa 33898316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 46610067 - 46610022
Alignment:
Q  70 attaccggaggcaaaaccaaaaataccctatattacagggggtaaa 115  Q
    ||||| || ||||||||||||| | |||||||||||||||||||||    
T  46610067 attacagggggcaaaaccaaaagtgccctatattacagggggtaaa 46610022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 10615324 - 10615288
Alignment:
Q  79 ggcaaaaccaaaaataccctatattacagggggtaaa 115  Q
    ||||||||||||| | |||||||||||||||||||||    
T  10615324 ggcaaaaccaaaagtgccctatattacagggggtaaa 10615288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 17261082 - 17261038
Alignment:
Q  71 ttaccggaggcaaaaccaaaaataccctatattacagggggtaaa 115  Q
    |||| ||||| ||||||||||||  ||||||||||||||||||||    
T  17261082 ttacaggagggaaaaccaaaaatgacctatattacagggggtaaa 17261038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 127
Target Start/End: Original strand, 18946030 - 18946086
Alignment:
Q  71 ttaccggaggcaaaaccaaaaataccctatattacagggggtaaaacatcgttaacc 127  Q
    |||| ||||| ||||  ||||||  ||||||||||||||||||||||||| ||||||    
T  18946030 ttacaggaggaaaaataaaaaatgacctatattacagggggtaaaacatcattaacc 18946086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 35434072 - 35434116
Alignment:
Q  71 ttaccggaggcaaaaccaaaaataccctatattacagggggtaaa 115  Q
    |||| ||||| ||||||||||||  ||||||||||||||||||||    
T  35434072 ttacaggagggaaaaccaaaaatgacctatattacagggggtaaa 35434116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 111
Target Start/End: Complemental strand, 37976019 - 37975987
Alignment:
Q  79 ggcaaaaccaaaaataccctatattacaggggg 111  Q
    ||||||||||||| |||||||||||||||||||    
T  37976019 ggcaaaaccaaaagtaccctatattacaggggg 37975987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 115
Target Start/End: Complemental strand, 11438387 - 11438352
Alignment:
Q  80 gcaaaaccaaaaataccctatattacagggggtaaa 115  Q
    |||||||||||| |||||||||||||||||||||||    
T  11438387 gcaaaaccaaaagtaccctatattacagggggtaaa 11438352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 7899936 - 7899981
Alignment:
Q  82 aaaaccaaaaataccctatattacagggggtaaaacatcgttaacc 127  Q
    ||||| ||||||  ||||||||||||||||||||||||| ||||||    
T  7899936 aaaacaaaaaatgacctatattacagggggtaaaacatcattaacc 7899981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 37274806 - 37274761
Alignment:
Q  70 attaccggaggcaaaaccaaaaataccctatattacagggggtaaa 115  Q
    ||||| || ||||||||||||| |||||||||||| ||||||||||    
T  37274806 attacagggggcaaaaccaaaagtaccctatattatagggggtaaa 37274761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 15061831 - 15061867
Alignment:
Q  79 ggcaaaaccaaaaataccctatattacagggggtaaa 115  Q
    ||||||||||||| | |||||||||||||||||||||    
T  15061831 ggcaaaaccaaaagtgccctatattacagggggtaaa 15061867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 15615160 - 15615116
Alignment:
Q  71 ttaccggaggcaaaaccaaaaataccctatattacagggggtaaa 115  Q
    ||||||| | ||||||||||| | |||||||||||||||||||||    
T  15615160 ttaccggggacaaaaccaaaagtgccctatattacagggggtaaa 15615116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0933 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 117
Target Start/End: Original strand, 2726 - 2764
Alignment:
Q  79 ggcaaaaccaaaaataccctatattacagggggtaaaac 117  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  2726 ggcaaatccaaaagtaccctatattacagggggtaaaac 2764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 45530749 - 45530795
Alignment:
Q  82 aaaaccaaaaataccctatattaca-gggggtaaaacatcgttaacc 127  Q
    ||||||||||||| ||||||||||| |||||||||||||| ||||||    
T  45530749 aaaaccaaaaataacctatattacaggggggtaaaacatcattaacc 45530795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 118
Target Start/End: Complemental strand, 25653750 - 25653714
Alignment:
Q  82 aaaaccaaaaataccctatattacagggggtaaaaca 118  Q
    ||||||||||||  |||||||||||||||||||||||    
T  25653750 aaaaccaaaaatgacctatattacagggggtaaaaca 25653714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 27164666 - 27164702
Alignment:
Q  79 ggcaaaaccaaaaataccctatattacagggggtaaa 115  Q
    ||||||||||||| | |||||||||||||||||||||    
T  27164666 ggcaaaaccaaaagtgccctatattacagggggtaaa 27164702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 115
Target Start/End: Complemental strand, 9966 - 9933
Alignment:
Q  82 aaaaccaaaaataccctatattacagggggtaaa 115  Q
    |||||||||| |||||||||||||||||||||||    
T  9966 aaaaccaaaagtaccctatattacagggggtaaa 9933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 64562 - 64521
Alignment:
Q  70 attaccggaggcaaaaccaaaaataccctatattacaggggg 111  Q
    ||||| || ||||||||||||| |||||||||||||||||||    
T  64562 attacagggggcaaaaccaaaagtaccctatattacaggggg 64521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 53533 - 53578
Alignment:
Q  82 aaaaccaaaaataccctatattacagggggtaaaacatcgttaacc 127  Q
    ||||||||||||  |||||||||||||||||||| || ||||||||    
T  53533 aaaaccaaaaatgacctatattacagggggtaaagcaccgttaacc 53578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 4765 - 4725
Alignment:
Q  71 ttaccggaggcaaaaccaaaaataccctatattacaggggg 111  Q
    |||| |||||||||||||||| | |||||||||||||||||    
T  4765 ttacaggaggcaaaaccaaaagtgccctatattacaggggg 4725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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