View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18144_low_3 (Length: 421)
Name: NF18144_low_3
Description: NF18144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18144_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 11 - 402
Target Start/End: Original strand, 41658392 - 41658785
Alignment:
| Q |
11 |
cacagatcaaagcagaagtagaaatatatcatatcacatatcaatcacattttacatacattgaaagacaaccacatcaccccaactatagttctagatt |
110 |
Q |
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| T |
41658392 |
cacagatcaaagcagaagtagaaatatatcatatcacatatcaatcatattttacatacattgaaagacaaccacaacatcccaactatagttctagatt |
41658491 |
T |
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| Q |
111 |
aagatctgcagactgcagtcaaccataattcagagctgaggtatgtagcagaaattgctaggtctaaggcctctgcgattggggccatcgaatatcaatt |
210 |
Q |
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| T |
41658492 |
aagatctgcagactgcagtcaaccataattcagagctgaggtatgtagcagaaattgctaggtctaaggcctctgcgattggggccatggaatatcaatt |
41658591 |
T |
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| Q |
211 |
actgctgtgcaatatcaaagatcacaacataatagtagcaactacaaccacacaagtcagaatctc-aaagaacataacatataccaccatgctagctat |
309 |
Q |
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| T |
41658592 |
actgctgtgcaatatcaaagatcacaacataatagtagcaactacaaccacacaagtcagaatctcaaaagaacataacatataccaccatgctagctat |
41658691 |
T |
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| Q |
310 |
tatagtggcattaagaaagatcatatatgcttacg-ctatcaaaacttgacacagctaccaaaatattataaaactgtctatagatccttatcc |
402 |
Q |
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| T |
41658692 |
tatagcggcattaaggaagatcatatatgcttacgtctatcaaaacttgacacagctaccaaaatattataaaactgtctatagatccttatcc |
41658785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 41657249 - 41657324
Alignment:
| Q |
13 |
cagatcaaagcagaagtagaaatatatcatatcacatatcaatcacattttacatacattgaaagacaaccacatc |
88 |
Q |
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| T |
41657249 |
cagatcacagcagaagtagaaacatatcatatcacatatcgatcacatttaacgtacttagaaagacaaccacatc |
41657324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 211
Target Start/End: Original strand, 41657325 - 41657411
Alignment:
| Q |
125 |
gcagtcaaccataattcagagctgaggtatgtagcagaaattgctaggtctaaggcctctgcgattggggccatcgaatatcaatta |
211 |
Q |
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| T |
41657325 |
gcagtcaaccatagttcaaaactgagcacggtaacagaaattgctagttctaaggcctctgcaattagggttatggaatatcaatta |
41657411 |
T |
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