View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18144_low_4 (Length: 421)
Name: NF18144_low_4
Description: NF18144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18144_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 14 - 402
Target Start/End: Complemental strand, 45635053 - 45634660
Alignment:
| Q |
14 |
atatagcacatggacgagtgacaaaacctttgtagtcggtgatagccttggtaagtgggaactagaatcctttctat----ttcatttcaaacacaactc |
109 |
Q |
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| T |
45635053 |
atatagcaaatggacgagtgaaaaaacctttgtagtcggtgatagccttggtaagtgggaactagaatcctttctatatatttcatttcaaacacaactc |
45634954 |
T |
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| Q |
110 |
aatgcttgctttttctc--cataatgagatgagaacaaagatataaaatttcat-aatttcttacattaatattattaatatgacagtgtttctctatgg |
206 |
Q |
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| T |
45634953 |
aatgcttgctttttctctccataatgagatgagaacaaagatataaaatt--atcaatttcttacattaatattattaatatgacagtgtttctctatgg |
45634856 |
T |
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| Q |
207 |
ggctatacacactgtggatgaagttgcagcaagtgattacatctcctgcaccactggaaatccaattagttcagacaatagtggtgagacaaccatagct |
306 |
Q |
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| T |
45634855 |
ggctatacacactgtggatgaagttgcagcaagtgactacatctcctgcaccactggaaatccaattagttcagacaatagtggtgagacaaccatagct |
45634756 |
T |
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| Q |
307 |
cttaagactgcaggaactcattatttcatatctgctacttttggagattgttcaagtggcatgcgtcttgctgttaaggttgaggctggtagtgct |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45634755 |
cttaagactgcaggaactcattatttcatatctgctacttttggagattgttcaagtggcatgcgtcttgctgttaaggttgaggctggtagtgct |
45634660 |
T |
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