View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18144_low_6 (Length: 316)

Name: NF18144_low_6
Description: NF18144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18144_low_6
NF18144_low_6
[»] chr4 (8 HSPs)
chr4 (55-316)||(3438713-3438969)
chr4 (201-281)||(640751-640831)
chr4 (190-229)||(1553005-1553044)
chr4 (132-231)||(6006094-6006193)
chr4 (143-230)||(55505339-55505426)
chr4 (129-231)||(570115-570217)
chr4 (154-230)||(370716-370792)
chr4 (186-222)||(7226125-7226161)
[»] chr8 (2 HSPs)
chr8 (132-316)||(32151068-32151252)
chr8 (66-316)||(17628162-17628409)
[»] chr3 (2 HSPs)
chr3 (201-316)||(514876-514991)
chr3 (204-275)||(51113970-51114041)
[»] chr1 (2 HSPs)
chr1 (146-230)||(43633978-43634062)
chr1 (203-241)||(7554326-7554364)
[»] chr6 (1 HSPs)
chr6 (205-265)||(9411195-9411255)
[»] chr2 (1 HSPs)
chr2 (201-258)||(45245291-45245348)


Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 55 - 316
Target Start/End: Complemental strand, 3438969 - 3438713
Alignment:
Q  55 atataactatggctccttcatatgtcaaacaaatgatcaaacttcataagagcagtttcaaaatgctaatggaggagaaggcatccacgacgcaagaaaa 154  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||| |||||    
T  3438969 atataattatggctccttcatatgtcaaccaaatgatcaaacttcataagagcagtttcaaaatgctaatggag---aaggcatccacgacgcaggaaaa 3438873  T
Q  155 gttccctctttttgccactgaaacgataacgaggaggagcagttacctttctcaatgatggccttgaaaataccatctcgacaacaaaattagcatacac 254  Q
    ||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  3438872 gttccctctttttgctactgaaatgataacgaggtggagcagttacctttctcaatgatggctttgaaaataccatctcgtcaacaaaattagcatacac 3438773  T
Q  255 ttgatcacaaccccttaaattgacctccctcggttgtgtacagtttttcatcacatacttca 316  Q
    |||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  3438772 ttgatcgcaaccccttaaattgacctccctcggt--tgtacagtttttcatcacatacttca 3438713  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 281
Target Start/End: Original strand, 640751 - 640831
Alignment:
Q  201 ctttctcaatgatggccttgaaaataccatctcgacaacaaaattagcatacacttgatcacaaccccttaaattgacctc 281  Q
    ||||||||||||||||||||||||||||||   | |||| | |||||||| ||||| || ||||||| |||||||||||||    
T  640751 ctttctcaatgatggccttgaaaataccattgagtcaacgacattagcattcactttattacaaccctttaaattgacctc 640831  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 1553044 - 1553005
Alignment:
Q  190 ggagcagttacctttctcaatgatggccttgaaaatacca 229  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  1553044 ggagcagttatctttctcaatgatggccttgaaaatacca 1553005  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 231
Target Start/End: Original strand, 6006094 - 6006193
Alignment:
Q  132 aaggcatccacgacgcaagaaaagttccctctttttgccactgaaacgataacgaggaggagcagttacctttctcaatgatggccttgaaaataccatc 231  Q
    |||||||||| |||||||||| ||||  | |||  || ||||  ||| | ||| ||| |||||||||| |||||||||||||||||||| ||||||||||    
T  6006094 aaggcatccatgacgcaagaagagttttcgcttgctgtcactacaacaaaaaccaggtggagcagttatctttctcaatgatggccttgtaaataccatc 6006193  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 230
Target Start/End: Complemental strand, 55505426 - 55505339
Alignment:
Q  143 gacgcaagaaaagttccctctttttgccactgaaacgataacgaggaggagcagttacctttctcaatgatggccttgaaaataccat 230  Q
    |||||||||| |||| | |||||| | |||| ||| || ||| ||| || || |||| ||||||||||||||||||||||||||||||    
T  55505426 gacgcaagaagagtttcttcttttcgtcactcaaatgaaaaccaggtggcgctgttatctttctcaatgatggccttgaaaataccat 55505339  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 231
Target Start/End: Original strand, 570115 - 570217
Alignment:
Q  129 gagaaggcatccacgacgcaagaaaagttccctctttttgccactgaaacgataacgaggaggagcagttacctttctcaatgatggccttgaaaatacc 228  Q
    |||||||||| || ||| |||||| || |||||||| |||    ||||||| |||||||| ||| |||||| ||||||||||||||| ||||| |||| |    
T  570115 gagaaggcatacatgacccaagaagagctccctcttgttgttgttgaaacggtaacgaggtggaacagttatctttctcaatgatggtcttgataatatc 570214  T
Q  229 atc 231  Q
    |||    
T  570215 atc 570217  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 370716 - 370792
Alignment:
Q  154 agttccctctttttgccactgaaacgataacgaggaggagcagttacctttctcaatgatggccttgaaaataccat 230  Q
    ||||||||||||||| ||  | || ||||| || | ||||||  || |||||| |||||||||||||||||||||||    
T  370716 agttccctctttttgtcatgggaaagataatgaagtggagcaactatctttctgaatgatggccttgaaaataccat 370792  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 7226161 - 7226125
Alignment:
Q  186 aggaggagcagttacctttctcaatgatggccttgaa 222  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  7226161 aggaggagcaattatctttctcaatgatggccttgaa 7226125  T

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Target: chr8 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 132 - 316
Target Start/End: Original strand, 32151068 - 32151252
Alignment:
Q  132 aaggcatccacgacgcaagaaaagttccctctttttgccactgaaacgataacgaggaggagcagttacctttctcaatgatggccttgaaaataccatc 231  Q
    |||||||||| |||||||||| |||| ||| |||||| ||||||||  ||||||||| |||||||||| ||||||||||||||||||||||||||||||     
T  32151068 aaggcatccatgacgcaagaagagtttcctttttttgtcactgaaatcataacgaggtggagcagttatctttctcaatgatggccttgaaaataccatt 32151167  T
Q  232 tcgacaacaaaattagcatacacttgatcacaaccccttaaattgacctccctcggttgtgtacagtttttcatcacatacttca 316  Q
    |   |||||| || ||||| |||||||||||||||||||||||||| ||||||| ||||| ||||||||||| |||||| |||||    
T  32151168 ttatcaacaatatcagcatgcacttgatcacaaccccttaaattgatctccctcagttgtatacagtttttcctcacatgcttca 32151252  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 316
Target Start/End: Complemental strand, 17628409 - 17628162
Alignment:
Q  66 gctccttcatatgtcaaacaaatgatcaaacttcataagagcagtttcaaaatgctaatggaggagaaggcatccacgacgcaagaaaagttccctcttt 165  Q
    |||||||| |||||||  ||||||| ||||||||| ||||| | |||||||||||||   |   | | |||||||| || || |||| | ||||| ||||    
T  17628409 gctccttcgtatgtcacccaaatgaccaaacttcagaagagtaatttcaaaatgcta---gcaaacatggcatccatgaagcgagaagacttcccccttt 17628313  T
Q  166 ttgccactgaaacgataacgaggaggagcagttacctttctcaatgatggccttgaaaataccatctcgacaacaaaattagcatacacttgatcacaac 265  Q
    ||| |    ||| |||||| ||| || ||| ||| ||||||||||| |||||||| ||||||||||  | |||||| |||||| | ||||| || |||||    
T  17628312 ttgtcgggaaaatgataaccaggtggggcaattatctttctcaatgttggccttgcaaataccatcatgtcaacaatattagctttcacttcataacaac 17628213  T
Q  266 cccttaaattgacctccctcggttgtgtacagtttttcatcacatacttca 316  Q
    |||||||| ||| ||||||| | ||||| |||||||||| ||||| |||||    
T  17628212 cccttaaactgatctccctcagctgtgtgcagtttttcaacacatgcttca 17628162  T

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Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 201 - 316
Target Start/End: Complemental strand, 514991 - 514876
Alignment:
Q  201 ctttctcaatgatggccttgaaaataccatctcgacaacaaaattagcatacacttgatcacaaccccttaaattgacctccctcggttgtgtacagttt 300  Q
    ||||||||||||||||||||||||||||||   | |||||| ||||  || ||||| || |||||| |||||||||| ||| ||| || |||| ||||||    
T  514991 ctttctcaatgatggccttgaaaataccattggggcaacaacattataatgcactttattacaacctcttaaattgatctctctcagtcgtgtgcagttt 514892  T
Q  301 ttcatcacatacttca 316  Q
    |||| ||||| |||||    
T  514891 ttcaccacatgcttca 514876  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 275
Target Start/End: Complemental strand, 51114041 - 51113970
Alignment:
Q  204 tctcaatgatggccttgaaaataccatctcgacaacaaaattagcatacacttgatcacaaccccttaaatt 275  Q
    ||||||||||||||||||||||| |||   | ||||||||||||||| ||||| |  ||||||| |||||||    
T  51114041 tctcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaatt 51113970  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 146 - 230
Target Start/End: Original strand, 43633978 - 43634062
Alignment:
Q  146 gcaagaaaagttccctctttttgccactgaaacgataacgaggaggagcagttacctttctcaatgatggccttgaaaataccat 230  Q
    ||||||| |||| | |||||||| |||| ||| || ||||||| || ||  ||| ||||||||||||||||||||||||||||||    
T  43633978 gcaagaagagtttcttctttttgtcactcaaatgaaaacgaggtggcgctattatctttctcaatgatggccttgaaaataccat 43634062  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 7554326 - 7554364
Alignment:
Q  203 ttctcaatgatggccttgaaaataccatctcgacaacaa 241  Q
    ||||||||||||||||||||| |||||||||| ||||||    
T  7554326 ttctcaatgatggccttgaaactaccatctcgtcaacaa 7554364  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 265
Target Start/End: Original strand, 9411195 - 9411255
Alignment:
Q  205 ctcaatgatggccttgaaaataccatctcgacaacaaaattagcatacacttgatcacaac 265  Q
    |||||||| ||||||||||||||||| ||| |||||| |||||||| |||| ||| |||||    
T  9411195 ctcaatgacggccttgaaaataccatatcgtcaacaatattagcatgcactcgatgacaac 9411255  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 45245348 - 45245291
Alignment:
Q  201 ctttctcaatgatggccttgaaaataccatctcgacaacaaaattagcatacacttga 258  Q
    |||| |||| |||||||||||||||||||||  ||||| || |||||||| |||||||    
T  45245348 ctttttcaacgatggccttgaaaataccatcgagacaataacattagcatgcacttga 45245291  T

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