View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18144_low_7 (Length: 305)

Name: NF18144_low_7
Description: NF18144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18144_low_7
NF18144_low_7
[»] chr7 (2 HSPs)
chr7 (178-286)||(27658121-27658229)
chr7 (41-100)||(27656844-27656903)
[»] chr5 (5 HSPs)
chr5 (178-286)||(37605833-37605941)
chr5 (36-100)||(37606029-37606093)
chr5 (190-270)||(33361024-33361104)
chr5 (190-270)||(5742432-5742512)
chr5 (38-80)||(30891764-30891806)
[»] chr6 (2 HSPs)
chr6 (36-100)||(31559482-31559546)
chr6 (190-270)||(18085300-18085380)
[»] scaffold0856 (1 HSPs)
scaffold0856 (190-270)||(1271-1351)
[»] chr4 (1 HSPs)
chr4 (38-75)||(7453567-7453604)


Alignment Details
Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 178 - 286
Target Start/End: Original strand, 27658121 - 27658229
Alignment:
Q  178 gtttcgttttccttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatct 277  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27658121 gtttcgttttccttctctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatct 27658220  T
Q  278 ttgtacagt 286  Q
    |||||||||    
T  27658221 ttgtacagt 27658229  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 41 - 100
Target Start/End: Original strand, 27656844 - 27656903
Alignment:
Q  41 aatgataagtaaacacaaaaatacaaacacaaaaatgacaccatacactattactcaata 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||| || |||||||    
T  27656844 aatgataagtaaacacaaaaatacaaacacaaaaatgataccatagactgttcctcaata 27656903  T

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Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 178 - 286
Target Start/End: Complemental strand, 37605941 - 37605833
Alignment:
Q  178 gtttcgttttccttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatct 277  Q
    |||||||||||||||||||| ||||| ||||||||||||||| |||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||    
T  37605941 gtttcgttttccttccctctttctgaatcactcatttcctatgagcaagaaaaaatcatctttcattcactcataggttctcgtcactccttcttcatct 37605842  T
Q  278 ttgtacagt 286  Q
    |||||||||    
T  37605841 ttgtacagt 37605833  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 37606093 - 37606029
Alignment:
Q  36 acaggaatgataagtaaacacaaaaatacaaacacaaaaatgacaccatacactattactcaata 100  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||    
T  37606093 acaggaatgataagtaaacacaataatacaaacacaaatatgacaccatacactgttactcaata 37606029  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 190 - 270
Target Start/End: Complemental strand, 33361104 - 33361024
Alignment:
Q  190 ttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttc 270  Q
    |||||||| ||||||||| |||||||| || | ||||||||||| |||||||||||||| |||  ||||||||||||||||    
T  33361104 ttccctctttctgattcagtcatttcccattaccaagaacaaataatctttcattcactaataatttctcgtcactccttc 33361024  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 190 - 270
Target Start/End: Original strand, 5742432 - 5742512
Alignment:
Q  190 ttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttc 270  Q
    |||||||| ||||||||||| ||||||||| || |||||| ||| ||||||||||||||  ||| | ||| ||||||||||    
T  5742432 ttccctctttctgattcactaatttcctatgagaaagaactaatcatctttcattcactagtagttgctcatcactccttc 5742512  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 80
Target Start/End: Original strand, 30891764 - 30891806
Alignment:
Q  38 aggaatgataagtaaacacaaaaatacaaacacaaaaatgaca 80  Q
    ||||||||||||| |||||||||||||||||||||||| ||||    
T  30891764 aggaatgataagtgaacacaaaaatacaaacacaaaaacgaca 30891806  T

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Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 31559482 - 31559546
Alignment:
Q  36 acaggaatgataagtaaacacaaaaatacaaacacaaaaatgacaccatacactattactcaata 100  Q
    ||||||||||||||||||||||| |||||||||| ||| ||||||||||||||| ||||||||||    
T  31559482 acaggaatgataagtaaacacaataatacaaacataaatatgacaccatacactgttactcaata 31559546  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 190 - 270
Target Start/End: Complemental strand, 18085380 - 18085300
Alignment:
Q  190 ttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttc 270  Q
    |||||||| ||||||||| |||||||| || | ||||||||||| |||||||||||||| |||  ||||||||||||||||    
T  18085380 ttccctctttctgattcagtcatttcccattaccaagaacaaataatctttcattcactaataatttctcgtcactccttc 18085300  T

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Target: scaffold0856 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0856
Description:

Target: scaffold0856; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 190 - 270
Target Start/End: Complemental strand, 1351 - 1271
Alignment:
Q  190 ttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttc 270  Q
    |||||||| ||||||||| |||||||| || | ||||||||||| |||||||||||||| |||  ||||||||||||||||    
T  1351 ttccctctttctgattcagtcatttcccatgatcaagaacaaatcatctttcattcactaataatttctcgtcactccttc 1271  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 7453567 - 7453604
Alignment:
Q  38 aggaatgataagtaaacacaaaaatacaaacacaaaaa 75  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  7453567 aggaatgataagtgaacacaaaaatacaaacacaaaaa 7453604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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