View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18144_low_8 (Length: 272)
Name: NF18144_low_8
Description: NF18144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18144_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 25578486 - 25578747
Alignment:
| Q |
1 |
aaagcattcagctttgttttctgtcatcatcaccgattcttcctctcaattaacaactagggtttcatctttttcttctctactttattcgctgtgagca |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25578486 |
aaagcattcagctttgttttctgttatcatcaccgattcttcctctcaattaacaactagggtttcatctttttcttctctactttattcgctgtgagca |
25578585 |
T |
|
| Q |
101 |
ttcttgctttttctactctttcatattcgcgcacataacatgtttgtgaaatgtcctctgtggattctctgtatagaataaccctgcaagctcaaatttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
25578586 |
ttcttgctttttctactctttcatattcgcgcacataacatgtttgtgaaatgtcctctgtggattctctgtttagaataaccctgcaagctcaaatttt |
25578685 |
T |
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| Q |
201 |
aactattcctatgtttttatgtaattagatgttggaataatatatcatagtactaccctttg |
262 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25578686 |
aactattcttatgtttttatgtaattagatgttggaataatatatcatagtactaccctttg |
25578747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 26136793 - 26137054
Alignment:
| Q |
1 |
aaagcattcagctttgttttctgtcatcatcaccgattcttcctctcaattaacaactagggtttcatctttttcttctctactttattcgctgtgagca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| || |||||||| || ||||||||||| |
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| T |
26136793 |
aaagcattcagctttgttttctgtcatcatcaccgattcttcctctcaataaacaactagggttccatcttttcctcctctacttaatccgctgtgagca |
26136892 |
T |
|
| Q |
101 |
ttcttgctttttctactctttcatattcgcgcacataacatgtttgtgaaatgtcctctgtggattctctgtatagaataaccctgcaagctcaaatttt |
200 |
Q |
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|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
26136893 |
ttctggcttttcctactctttcatattcgcgcacataacatgtttgtgaaatgtcctctgtggattctctgtttagaataaccctgcaagctcaaatttt |
26136992 |
T |
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| Q |
201 |
aactattcctatgtttttatgtaattagatgttggaataatatatcatagtactaccctttg |
262 |
Q |
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|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26136993 |
aactatccttatgtttttatgtaattagatgttggaataatatatcatagtactaccctttg |
26137054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 33852970 - 33853232
Alignment:
| Q |
1 |
aaagcattcagctttgttttctgtcatcatcaccgattcttcctctcaattaacaactagggtttcatcttt-ttcttctctactttattcgctgtgagc |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
33852970 |
aaagcattcagctttgttttctgtcatcatcaccgattcttcctctcaattaacaattagggtttcatctttattcttctctactttattcgctgtgagc |
33853069 |
T |
|
| Q |
100 |
attcttgctttttctactctttcatattcgcgcacataacatgtttgtgaaatgtcctctgtggattctctgtatagaataaccctgcaagctcaaattt |
199 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33853070 |
attcttactttttctactctttcatattcgcgcacataacatgtttgtgaaatgtcctctgtgaattctctgtatagaataaccctgcaagctcaaattt |
33853169 |
T |
|
| Q |
200 |
taactattcctatgtttttatgtaattagatgttggaataatatatcatagtactaccctttg |
262 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33853170 |
taactattcttatgtttttatgtaattagatgttggaataatatatcatagtactaccctttg |
33853232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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