View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18145_high_2 (Length: 277)
Name: NF18145_high_2
Description: NF18145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18145_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 30230384 - 30230123
Alignment:
| Q |
1 |
accaataaggacacacattgcgtgcatttgtcaaaatttcgaccacaccaagcctttggagaatgtttgatgtaatgtctctaggaagctcaagccaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30230384 |
accaataaggacacacattgcgtgcatttgtcaaaatttcgaccacaccaagcctttggagaatgtttgatgtaatgtctctaggaagctcaagccaatt |
30230285 |
T |
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| Q |
101 |
tggccccattgtgctctcccttttccttttctttattgatctgaaacatgatgccatcttacaaataagacaaataaactttaggtacatagaaaagtaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30230284 |
tggccccattgtgctctcccttttccttttctttgttgatctgaaacatggtgccatcttacaaataagacaaataaattttaggtacatagaaaagtaa |
30230185 |
T |
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| Q |
201 |
cnnnnnnngaaagggaaatagagatat-at--aatacgctatatcaaatgtttggcatttgc |
259 |
Q |
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| T |
30230184 |
caaaaaaagaaagggaaatagagatatgatccaatacgtgatatcaaaagtttggcatttgc |
30230123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 30223143 - 30222880
Alignment:
| Q |
1 |
accaataaggacacacattgcgtgcatttgtcaaaatttcgaccacaccaagcctttggagaatgtttgatgtaatgtctctaggaagctcaagccaatt |
100 |
Q |
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||||||||||||||||||||||||| || ||| |||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
30223143 |
accaataaggacacacattgcgtgccttcttcagaatttcaactggaccaagcctttggagaatgtttgatgtgatgtctctaggaagctcaagccaatt |
30223044 |
T |
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| Q |
101 |
tggccccattgtgctctcccttttccttttctttattgatctgaaacatgatgccatcttacaaataagacaaataaactttaggtacatagaaaagtaa |
200 |
Q |
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| T |
30223043 |
tggccccattgtgctctcccttttccttttctttattgatctgaaacatgatgccatcttacaaataagacaaataaactttaggtacatagaaaagtaa |
30222944 |
T |
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| Q |
201 |
c--nnnnnnngaaagggaaatagagat---atataatacgctatatcaaatgtttggcatttgc |
259 |
Q |
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| | ||||||||||||||| |||||||||| ||||||||||||||| |||||| |
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| T |
30222943 |
caaaaaaaaagtaagggaaatagagatatgatataatacgtgatatcaaatgtttggtatttgc |
30222880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 47 - 119
Target Start/End: Complemental strand, 30227348 - 30227276
Alignment:
| Q |
47 |
accaagcctttggagaatgtttgatgtaatgtctctaggaagctcaagccaatttggccccattgtgctctcc |
119 |
Q |
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| T |
30227348 |
accaagcctttgaagaatgtttgttgtgatgtctctaggaagttcaagccaatttggccccattgtgctctcc |
30227276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 50 - 178
Target Start/End: Complemental strand, 30201170 - 30201042
Alignment:
| Q |
50 |
aagcctttggagaatgtttgatgtaatgtctctaggaagctcaagccaatttggccccattgtgctctcccttttccttttctttattgatctgaaacat |
149 |
Q |
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||||||||| ||||||||| |||||||||| ||||||| |||||||||||||||||||||||||| |||||||| | ||| || |||||| ||| || |
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| T |
30201170 |
aagcctttgaagaatgttttctgtaatgtctttaggaagttcaagccaatttggccccattgtgctttccctttttttcttccttgctgatctcaaaaat |
30201071 |
T |
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| Q |
150 |
gatgccatcttacaaataagacaaataaa |
178 |
Q |
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| T |
30201070 |
ggtgccatcatacaaacaagtcgaataaa |
30201042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 119
Target Start/End: Complemental strand, 30214705 - 30214648
Alignment:
| Q |
62 |
aatgtttgatgtaatgtctctaggaagctcaagccaatttggccccattgtgctctcc |
119 |
Q |
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|||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
30214705 |
aatgtttgttgtgatgtctctaggaagttcaagccaatttggccccattgtgctctcc |
30214648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 29856844 - 29856776
Alignment:
| Q |
49 |
caagcctttggagaatgtttgatgtaatgtctctaggaagctcaagccaatttggccccattgtgctct |
117 |
Q |
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|||||||||| || ||||||| ||| || ||||| |||| ||||||||||||||| |||||||||||| |
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| T |
29856844 |
caagcctttgaaggatgtttgctgtgatttctctcagaagttcaagccaatttggcaccattgtgctct |
29856776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 38284509 - 38284410
Alignment:
| Q |
1 |
accaataaggacacacattgcgtgcatttgtcaaaatttcgaccacaccaagcctttggagaatgtttgatgtaatgtctctaggaagctcaagccaatt |
100 |
Q |
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||||||| ||||||||||||||||||||||| | |||||| || |||| ||||||| ||||||||||||||| | |||| | ||||| ||||||||||| |
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| T |
38284509 |
accaatacggacacacattgcgtgcatttgtaagaatttcaacagcaccgagccttttgagaatgtttgatgttaagtctttgggaagttcaagccaatt |
38284410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 14934581 - 14934639
Alignment:
| Q |
46 |
caccaagcctttggagaatgtttgatgtaatgtctctaggaagctcaagccaatttggc |
104 |
Q |
| |
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|||||||||||||||||||||||| || | ||||| ||||| ||||||||||||||| |
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| T |
14934581 |
caccaagcctttggagaatgtttgcagtcacatctcttggaagttcaagccaatttggc |
14934639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 16644824 - 16644881
Alignment:
| Q |
50 |
aagcctttggagaatgtttgatgtaatgtctctaggaagctcaagccaatttggcccc |
107 |
Q |
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||||||||| ||||||||| ||| || ||||||||||| |||||||||||||||||| |
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| T |
16644824 |
aagcctttgaagaatgttttgtgtgatatctctaggaaggtcaagccaatttggcccc |
16644881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 17619185 - 17619242
Alignment:
| Q |
50 |
aagcctttggagaatgtttgatgtaatgtctctaggaagctcaagccaatttggcccc |
107 |
Q |
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||||||||| ||||||||| ||| || ||||||||||| |||||||||||||||||| |
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| T |
17619185 |
aagcctttgaagaatgttttgtgtgatatctctaggaaggtcaagccaatttggcccc |
17619242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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