View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18145_high_3 (Length: 250)
Name: NF18145_high_3
Description: NF18145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18145_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 30230692 - 30230925
Alignment:
| Q |
1 |
ctacgacgcatccaacttacaaaatgccgaaatatttcacacnnnnnnnttagtgaagttgcaaacaaatttccactgctagaggagctggacatttcat |
100 |
Q |
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| T |
30230692 |
ctacgacgcatccaacttacaaaatgccgaaatattttacacaaacaatttagtgaagttgcaaacaaatttccactgctagaggagctggacatttcat |
30230791 |
T |
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| Q |
101 |
ttagcaacctatgtaaggattctcttgaagtcattggtcggagttgcccacttttgaaatcaataaaatttagcagaatgttcagcaaagacatcgagtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
30230792 |
ttagcaacctatgtaaggattctcttgaagtcattggtcggagttgcccacttttgaaatcaataaaatttagcagaatgttcagcaaagacatcgagct |
30230891 |
T |
|
| Q |
201 |
gaatgatgacgcttttgctattgcaaaaaccatg |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
30230892 |
gaatgatgacgcttttgctattgcaaaaaccatg |
30230925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 30223696 - 30223932
Alignment:
| Q |
1 |
ctacgacgcatccaacttacaaaatgccgaaatatttcacacnnnnnnnttagtgaagttgcaaacaaatttccactgctagaggagctggacatttcat |
100 |
Q |
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| T |
30223696 |
ctacgacacatgcaacttacaaaatgccgaaatattttgcacaaacaaattagtgaagttgcaatcaaatttccactgctagaggagcttgacatttcat |
30223795 |
T |
|
| Q |
101 |
ttagcaacctatgtaaggattctcttgaagtcattggtcggagttgcccacttttgaaatcaataaaatttagcagaatgttcagcaaagacatcgagtt |
200 |
Q |
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| T |
30223796 |
ttagcaacctatgtaaggattctcttgaagtcattggtcggagttgcccacttttgaaatcattaaaatttagcagaatgttcagtaaagacatcgagtt |
30223895 |
T |
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| Q |
201 |
gaatgatgacgcttttgctattgcaaaaaccatgcct |
237 |
Q |
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| T |
30223896 |
gaatgatgacgcttttgctattgcaaaaaccatgcct |
30223932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 30202844 - 30203080
Alignment:
| Q |
1 |
ctacgacgcatccaacttacaaaatgccgaaatatttcacacnnnnnnnttagtgaagttgcaaacaaatttccactgctagaggagctggacatttcat |
100 |
Q |
| |
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||||| ||||| || ||||| ||||||||||||||||| ||| ||||| | ||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
30202844 |
ctacgtcgcatacagcttacgaaatgccgaaatatttcgcacagacaatttagtaaggttgcaaacaaatttcctctgctagaggagcttgacatttcat |
30202943 |
T |
|
| Q |
101 |
ttagcaacctatgtaaggattctcttgaagtcattggtcggagttgcccacttttgaaatcaataaaatttagcagaatgttcagcaaagacatcgagtt |
200 |
Q |
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| T |
30202944 |
ttagcaacctatgtaaggattctcttgaagtcattggtcggagttgtccacttttgatatcactaaaatttagcaggatgttctgcaaagacattgagtt |
30203043 |
T |
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| Q |
201 |
gaatgatgacgcttttgctattgcaaaaaccatgcct |
237 |
Q |
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| T |
30203044 |
gaatgatgacgcaattgctattgcaaaaaccatgcct |
30203080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 52 - 237
Target Start/End: Complemental strand, 16644257 - 16644075
Alignment:
| Q |
52 |
agtgaagttgcaaacaaatttccactgctagaggagctggacatttcatttagcaacctatgtaaggattctcttgaagtcattggtcggagttgcccac |
151 |
Q |
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||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||| |||||||||||||||| |||||||||| |||||| | |
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| T |
16644257 |
agtgaagttgcaaacaaatttccactgttagaggagcttgacatttcatttagcaacatatctaaggattctcttgaattcattggtcgtttttgccctc |
16644158 |
T |
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| Q |
152 |
ttttgaaatcaataaaatttagcagaatgttcagcaaagacatcgagttgaatgatgacgcttttgctattgcaaaaaccatgcct |
237 |
Q |
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|| |||||||| ||||||||||||||| ||| || | |||| ||| ||||||| || || ||||||||||||||||||||| |
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| T |
16644157 |
ttctgaaatcactaaaatttagcagaagtttcttcagaagcatcaagtggaatgat---gcattagctattgcaaaaaccatgcct |
16644075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 52 - 237
Target Start/End: Complemental strand, 17618618 - 17618436
Alignment:
| Q |
52 |
agtgaagttgcaaacaaatttccactgctagaggagctggacatttcatttagcaacctatgtaaggattctcttgaagtcattggtcggagttgcccac |
151 |
Q |
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||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||| |||||||||||||||| |||||||||| |||||| | |
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| T |
17618618 |
agtgaagttgcaaacaaatttccactgttagaggagcttgacatttcatttagcaacatatctaaggattctcttgaattcattggtcgtttttgccctc |
17618519 |
T |
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| Q |
152 |
ttttgaaatcaataaaatttagcagaatgttcagcaaagacatcgagttgaatgatgacgcttttgctattgcaaaaaccatgcct |
237 |
Q |
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|| |||||||| ||||||||||||||| ||| || | |||| ||| ||||||| || || ||||||||||||||||||||| |
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| T |
17618518 |
ttctgaaatcactaaaatttagcagaagtttcttcagaagcatcaagtggaatgat---gcattagctattgcaaaaaccatgcct |
17618436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 167
Target Start/End: Complemental strand, 1152537 - 1152487
Alignment:
| Q |
117 |
ggattctcttgaagtcattggtcggagttgcccacttttgaaatcaataaa |
167 |
Q |
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|||||||||||||||||||||||| ||||||| | |||||||||| |||| |
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| T |
1152537 |
ggattctcttgaagtcattggtcgttgttgccctcgtttgaaatcattaaa |
1152487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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