View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18145_high_4 (Length: 243)
Name: NF18145_high_4
Description: NF18145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18145_high_4 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 7 - 243
Target Start/End: Complemental strand, 2693025 - 2692785
Alignment:
| Q |
7 |
aatattaaaggaaaaaataacacgtaatggat----agatagtttaagaaataaaagataataacccggaatgacatgccaccacatggaatatatttat |
102 |
Q |
| |
|
||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2693025 |
aatattaaaggaaaaaacaacatgtaatggatggatagatagtttaagaaataaaagataataacccggaatgacatgccaccacatggaatatatttat |
2692926 |
T |
|
| Q |
103 |
tttttcgatacacaaatatcattggtacatcaagagcataatcaacaaactgctcaaacctgttgcaaaatcacacaccaaatcaaaccacactttttgt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2692925 |
tttttcgatacacaaatatcattggtacatcaagagcataatcaacaaactgctcaaacctgttgcaaaatcacacaccaaatcaaaccacactttttgt |
2692826 |
T |
|
| Q |
203 |
gtttgaattttatttaaaacttagaaaagtaaagataaaca |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2692825 |
gtttgaattttatttaaaacttagaaaagtaaagataaaca |
2692785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 43 - 189
Target Start/End: Complemental strand, 2684647 - 2684504
Alignment:
| Q |
43 |
agtttaagaaataaaagataataacccggaatgacatgccaccacatggaatatatttattttttcgatacacaaatatcattggtacatcaagagcata |
142 |
Q |
| |
|
||||||||||||| ||||| | |||||||||||||||||||||| | ||||||| ||||||||||||| | ||||| ||| ||||||||||||||||| |
|
|
| T |
2684647 |
agtttaagaaatagaagatta---cccggaatgacatgccaccacaagcaatatatctattttttcgataaataaataccatcggtacatcaagagcata |
2684551 |
T |
|
| Q |
143 |
atcaacaaactgctcaaacctgttgcaaaatcacacaccaaatcaaa |
189 |
Q |
| |
|
|||| ||| ||||||||||||| | | || |||||| ||||||||| |
|
|
| T |
2684550 |
gtcaataaattgctcaaacctgtaggagaagcacacaacaaatcaaa |
2684504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 164
Target Start/End: Original strand, 40924779 - 40924850
Alignment:
| Q |
93 |
atatatttattttttcgatacacaaatatcattggtacatcaagagcataatcaacaaactgctcaaacctg |
164 |
Q |
| |
|
|||||||| ||||| ||||| ||||| |||||| |||||||||||| ||||||| |||||||||||||| |
|
|
| T |
40924779 |
atatatttctttttccgatagacaaaatacattggaacatcaagagcaaaatcaacgtactgctcaaacctg |
40924850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University