View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18145_low_1 (Length: 374)
Name: NF18145_low_1
Description: NF18145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18145_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 14 - 358
Target Start/End: Original strand, 15627892 - 15628236
Alignment:
| Q |
14 |
ctgtgaccgaaacaccgattatcatagaagcttttttcttctttggtcgaggaggttgtgggagtgaagacaaatcaagtggtggtgccggtccgttgat |
113 |
Q |
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| T |
15627892 |
ctgtgaccgaaacactgattatcatagaagtttttttcttctttggtcgaggaggttgtgggagtgaagacaaatcaagtggtggtgccggtccgttgat |
15627991 |
T |
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| Q |
114 |
tttaaagctccaacccaagatgtaatgagagctagcaagctgtaaaccagttgatgcagagaatccaacatacatagtatcatgaaaaataggcgataga |
213 |
Q |
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| T |
15627992 |
tttaaagctccaacccaagatgtaatgagagctagcaagctgtaaaccagttgatgcagagaatccaacatacatagtatcatgaaaaataggcgataga |
15628091 |
T |
|
| Q |
214 |
tcggtatgaaaggacaaagttggnnnnnnnggttttgttgaagttggagaaagtgtaacactaacaagatttattgaagaatcataatcaacccaagcta |
313 |
Q |
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| T |
15628092 |
tcggtatgaaaggacaaagttggtttttttggttttgttgaagttggagaaagtgtaacactaacaagatttattgaagaatcataatcaacccaagcta |
15628191 |
T |
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| Q |
314 |
gaattggtttcccacttttgatatcaagatgttgttgtttggttg |
358 |
Q |
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| T |
15628192 |
gaattggtttcccacttttgatatcaagatgttgttgtttggttg |
15628236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 6e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 8 - 349
Target Start/End: Complemental strand, 22933780 - 22933442
Alignment:
| Q |
8 |
cagaacctgtgaccgaaacaccgattatcatagaagcttttttcttctttggtcgaggaggttgtgggagtgaagacaaatcaagtggtggtgccggtcc |
107 |
Q |
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| T |
22933780 |
cagaagctgtgagtgaaacaccaactatcaaagaagtttgtttcttctttggttgtggaagttgtggaagtgaagacaagtcaagaaatggtgctactcc |
22933681 |
T |
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| Q |
108 |
gttgattttaaagctccaacccaagatgtaatgagagctagcaagctgtaaaccagttgatgcagagaatccaacatacatagtatcatgaaaaataggc |
207 |
Q |
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| T |
22933680 |
attgattttgaaactccaacccaacaagtaatgaaaggctgcaagatt---accagttgaagcagagaaaccaacatacatagtatcatgaaaaatagga |
22933584 |
T |
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| Q |
208 |
gatagatcggtatgaaaggacaaagttggnnnnnnnggttttgttgaagttggagaaagtgtaacactaacaagatttattgaagaatcataatcaaccc |
307 |
Q |
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| T |
22933583 |
gatagatccacatgaaaggacaagatcggttttttcggtttaattgaagttggagaaagtgtaacactaataagattcaatgaagaatcataatcaaccc |
22933484 |
T |
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| Q |
308 |
aagctagaattggtttcccacttttgatatcaagatgttgtt |
349 |
Q |
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| T |
22933483 |
aaacaagaattggtttcccacttttaatattaagatcttgtt |
22933442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 112 - 328
Target Start/End: Original strand, 22921915 - 22922128
Alignment:
| Q |
112 |
attttaaagctccaacccaagatgtaatgagagctagcaagctgtaaaccagttgatgcagagaatccaacatacatagtatcatgaaaaataggcgata |
211 |
Q |
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|||||||| ||||| ||||| | ||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||| |||||| ||| |||| |
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| T |
22921915 |
attttaaaactccatcccaaaacataatgagagctagcaag---taaaccagttgaagcagagaaaccaacatacatagtatcaagaaaaagaggtgata |
22922011 |
T |
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| Q |
212 |
gatcggtatgaaaggacaaagttggnnnnnnnggttttgttgaagttggagaaagtgtaacactaacaagatttattgaagaatcataatcaacccaagc |
311 |
Q |
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| T |
22922012 |
gatccatatgaaaagtcaaaataggttttttaggcttattagaagttggtgaaagtgtaacactaataagttccaatgaagaatcataatcaacccaaac |
22922111 |
T |
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| Q |
312 |
tagaattggtttcccac |
328 |
Q |
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|| ||||||||| |||| |
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| T |
22922112 |
taaaattggttttccac |
22922128 |
T |
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