View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18145_low_7 (Length: 213)
Name: NF18145_low_7
Description: NF18145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18145_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 93 - 166
Target Start/End: Original strand, 14881230 - 14881303
Alignment:
| Q |
93 |
cacataaagtctttcagaagctgcaaaattcttacgctaattcacattataatagattacttcaacattgatgc |
166 |
Q |
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| T |
14881230 |
cacataaagtctttcagaagctgcaaaattcttacgctaattcacattataatagatcacttcaacattgatgc |
14881303 |
T |
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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 194
Target Start/End: Original strand, 14881393 - 14881423
Alignment:
| Q |
164 |
tgcggggaaaacaaatatggaattgaaggtt |
194 |
Q |
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| T |
14881393 |
tgcggggaaaacaaatatggaattgaaggtt |
14881423 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 164
Target Start/End: Original strand, 10671583 - 10671650
Alignment:
| Q |
98 |
aaagtctttcagaagctgcaaaattcttacg-ctaattcacattataatagattacttcaacattgat |
164 |
Q |
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| T |
10671583 |
aaagtccttcaaaagttgcaaaattcttacgcctaagtcacattataatagattatttaaacactgat |
10671650 |
T |
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