View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18146_high_6 (Length: 250)
Name: NF18146_high_6
Description: NF18146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18146_high_6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 40505735 - 40505974
Alignment:
| Q |
11 |
cagagacaaaaagaatgttgttgactttgtttgcttgagaatatgttcccaaagcagcaggtgctttttctgtttcaacagcttccttaattcctattcc |
110 |
Q |
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| T |
40505735 |
cagagacaaaaagaatgttgttgactttgtttgcttgagaatatggtcccaaagcagcaggtgctttttctgtttcaacagcttccttaattcctattcc |
40505834 |
T |
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| Q |
111 |
tacaatcaatcaaacccaacaagcactaaatcatagatttatacattcctcaatccatgatcagaattaacgttaacattaggaaaaacaatgacccgta |
210 |
Q |
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| T |
40505835 |
tacaatcaatcaaacccaacaagcactaaatcatagatttatacattcctcaatccatgatcagaattaacgttaacattaggaaaaacaattacccgta |
40505934 |
T |
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| Q |
211 |
ttgtaaaaaatgtaactttattgattttggtggaaaatgc |
250 |
Q |
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| T |
40505935 |
ttgtaaaaaatgtaactttattgattttggtggaaaatgc |
40505974 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 20483087 - 20483172
Alignment:
| Q |
13 |
gagacaaaaagaatgttgttgactttgtttgcttgagaatatgttcccaaagcagcaggtgctttttctgtttcaacagcttcctt |
98 |
Q |
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| T |
20483087 |
gagacaaatagaaggttgttggctttgattgcttgagaatacggtcccaatgctgctggggctttttctgtcgaaacagcttcctt |
20483172 |
T |
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