View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18146_high_8 (Length: 220)
Name: NF18146_high_8
Description: NF18146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18146_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 42419388 - 42419200
Alignment:
| Q |
17 |
atacttccacggctagtctttttaacaagttctgttgaaataaatcatgtgtgacattttagtatcgaaaaaatttacatatatatccataacatttctc |
116 |
Q |
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| T |
42419388 |
atacttccacggctggtctttttaacaagttctgttgagataaatcatgtgtgacattttagtatcgaaaaaatttacatacatatccataccatttctc |
42419289 |
T |
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| Q |
117 |
ttatcacttcgccttcagaaaactatttctcctatcgcttcatatttgaatctaaattttcaaatccaaaatctttaaaaccaaagtat |
205 |
Q |
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| T |
42419288 |
ttatcacttcgccttcagaaaactatttctcctatcgcttcatatttgaatctaaattttcaaatccaaaatctttaaaaccaaagtat |
42419200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 1812303 - 1812257
Alignment:
| Q |
30 |
tagtctttttaacaagttctgttgaaataaatcatgtgtgacatttta |
77 |
Q |
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| T |
1812303 |
tagtctttttaacaagttc-gttaaaataaagcatgtgtgacatttta |
1812257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 42305785 - 42305745
Alignment:
| Q |
165 |
aatctaaattttcaaatccaaaatctttaaaaccaaagtat |
205 |
Q |
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| T |
42305785 |
aatctaaattctcaaatccaaaaactttaaaaccgaagtat |
42305745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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