View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18146_low_1 (Length: 422)
Name: NF18146_low_1
Description: NF18146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18146_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 13 - 411
Target Start/End: Original strand, 4921888 - 4922286
Alignment:
| Q |
13 |
aaaggctagaaatatgcattggagctgcaaaaggactacactatcttcacactggaacaaagcgtccgattttccaccgtgacgtaaagccttacagcat |
112 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4921888 |
aaaggcttgaaatatgcattggagctgcaaaaggactgcactaccttcacactggagcaaagcgcccgattttccaccgtgacgtaaagccttacagcat |
4921987 |
T |
|
| Q |
113 |
tcttttggataacaatatggcaccaaaactctcgcaatttggattatccttacaagggaagctttcaaaatcggagtcaaaaccaattgaagtcaacacg |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
4921988 |
tcttttggataacaatatggcaccaaaactctcgcaatttggattatccttacaagggaagctttcaaaatcggagtcaaaaccaattgaagtcaacgcg |
4922087 |
T |
|
| Q |
213 |
atttgtggtaaagtgttaaattttattaaactatttttatggtgcattcttatttatccatcaacaataggaaggcaaataaattatttttattaatgtc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4922088 |
atttgtggtaaagtgttaaattttattaaactatttttatggtgcattcttatttatccatcaataataggaaggcaaataaattatttttattaatgtc |
4922187 |
T |
|
| Q |
313 |
aattttgatgggtaacctctacacaccttaccttttgtcgatgagtattttctagggatcgcctaaaatgtccaattctcgattcccttgcctctcttt |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4922188 |
aattttgatgggtaacctctacacaccttaccttttgtcgatgagtattttctagggatcgcctaaaatgtccaattctcgattcccttgcctctcttt |
4922286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 13 - 206
Target Start/End: Original strand, 4928129 - 4928322
Alignment:
| Q |
13 |
aaaggctagaaatatgcattggagctgcaaaaggactacactatcttcacactggaacaaagcgtccgattttccaccgtgacgtaaagccttacagcat |
112 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | | ||| |
|
|
| T |
4928129 |
aaaggcttgaaatatgcattggagctgcaaaaggactacactatcttcacactggaacaaagcgtccgattttccaccgtgacgtaattccacagaacat |
4928228 |
T |
|
| Q |
113 |
tcttttggataacaatatggcaccaaaactctcgcaatttggattatccttacaagggaagctttcaaaatcggagtcaaaaccaattgaagtc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||| |
|
|
| T |
4928229 |
tcttttggataacaatatggcaccaaaactctcgcaatttggattatccttacaagggaagctttctaaatcggagtcaataccaattgtagtc |
4928322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 13 - 210
Target Start/End: Complemental strand, 4908087 - 4907890
Alignment:
| Q |
13 |
aaaggctagaaatatgcattggagctgcaaaaggactacactatcttcacactggaacaaagcgtccgattttccaccgtgacgtaaagccttacagcat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| | ||||| ||| ||||| |||||||| | | ||| |
|
|
| T |
4908087 |
aaaggctagaaatatgcattggagctgcaaaaggactacactaccttcacactggagcaaagcgcgcaatttttcactgtgacataaagcctcaaaccat |
4907988 |
T |
|
| Q |
113 |
tcttttggataacaatatggcaccaaaactctcgcaatttggattatccttacaagggaagctttcaaaatcggagtcaaaaccaattgaagtcaaca |
210 |
Q |
| |
|
|||||| ||||| ||||||| ||||||||||||||| ||||||| |||||||||||||||||| | || || || |||||||| |||||||||||| |
|
|
| T |
4907987 |
tcttttagataagaatatggtaccaaaactctcgcatcttggattttccttacaagggaagcttcctaactctaagccaaaaccagttgaagtcaaca |
4907890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 13 - 178
Target Start/End: Original strand, 5822166 - 5822331
Alignment:
| Q |
13 |
aaaggctagaaatatgcattggagctgcaaaaggactacactatcttcacactggaacaaagcgtccgattttccaccgtgacgtaaagccttacagcat |
112 |
Q |
| |
|
||||||| ||||||||||| |||||||| || ||||||||||| |||||||||||||||||||| || |||| || ||||| |||| ||| | | ||| |
|
|
| T |
5822166 |
aaaggcttgaaatatgcatcggagctgctaagggactacactaccttcacactggaacaaagcgcacggtttttcattgtgacataaaacctcaaaccat |
5822265 |
T |
|
| Q |
113 |
tcttttggataacaatatggcaccaaaactctcgcaatttggattatccttacaagggaagctttc |
178 |
Q |
| |
|
|||||| ||||| ||||||| |||||||||||| || ||||||| || ||||||||||||||||| |
|
|
| T |
5822266 |
tcttttagataagaatatggtaccaaaactctcacatcttggattttctttacaagggaagctttc |
5822331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 184
Target Start/End: Complemental strand, 4904163 - 4903992
Alignment:
| Q |
13 |
aaaggctagaaatatgcattggagctgcaaaaggactacactatcttcacactggaacaaagcgtccgattttccaccgtgacgtaaagccttacagcat |
112 |
Q |
| |
|
||||||| |||||||||||||||| ||||| ||||||||||||||||||||| ||| ||||||| | ||||| ||| |||| |||||||| | | || |
|
|
| T |
4904163 |
aaaggcttgaaatatgcattggagttgcaagaggactacactatcttcacaccggagcaaagcgcgcaatttttcactgtgatataaagcctcaaacaat |
4904064 |
T |
|
| Q |
113 |
tcttttggataacaatatggcaccaaaactctcgcaatttggattatccttacaagggaagctttcaaaatc |
184 |
Q |
| |
|
|||||| |||||||| |||| |||||||||| | ||| ||||| | ||||| |||| ||||| ||| ||||| |
|
|
| T |
4904063 |
tcttttagataacaaaatggtaccaaaactcgcacaacttggaatttccttgcaagagaagcgttctaaatc |
4903992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 4953633 - 4953570
Alignment:
| Q |
10 |
aacaaaggctagaaatatgcattggagctgcaaaaggactacactatcttcacactggaacaaa |
73 |
Q |
| |
|
||||||||||| |||| ||||||||||| ||| ||| |||||||||||||||| |||||||| |
|
|
| T |
4953633 |
aacaaaggctaaaaatttgcattggagcagcatgtggagtacactatcttcacacaggaacaaa |
4953570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 27539433 - 27539485
Alignment:
| Q |
12 |
caaaggctagaaatatgcattggagctgcaaaaggactacactatcttcacac |
64 |
Q |
| |
|
|||||||| || ||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
27539433 |
caaaggcttgagatatgcattggagctgctcgaggtctacactatcttcacac |
27539485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 46271671 - 46271723
Alignment:
| Q |
12 |
caaaggctagaaatatgcattggagctgcaaaaggactacactatcttcacac |
64 |
Q |
| |
|
|||||||| || ||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
46271671 |
caaaggcttgagatatgcattggagctgctcgaggtctacactatcttcacac |
46271723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University