View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18146_low_2 (Length: 413)
Name: NF18146_low_2
Description: NF18146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18146_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 21 - 388
Target Start/End: Original strand, 1832284 - 1832651
Alignment:
| Q |
21 |
gaaccaatggaaaatagataaatttcttcttatttcatctatgatttctttacctaaattttgaagtttaacccttcttaaattggatgtacaacttctt |
120 |
Q |
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| T |
1832284 |
gaaccaatggaaaatagataaatttcttcttatttcatctatgatttctttacctaaattttgaagtttaacccttcttaaattggatgtacaacttctt |
1832383 |
T |
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| Q |
121 |
ctctttggttgtaggtttcttttaatttggaccggtgaaagttgaggtccaacttggaccagttgaaatctgacctttgatataatattaattaatatag |
220 |
Q |
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| T |
1832384 |
ctctttggttgtaggtttcttttaatttggaccggtgaaagttgaggtccaacttggaccagttgaaatctgacctttgatataatattaattaatatag |
1832483 |
T |
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| Q |
221 |
acgattgtgatagacactcaagtacctgatgtataagttaaatactatccaagcctagtgtaagagtgaccacacagtagcaattttatcattggaaaat |
320 |
Q |
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| T |
1832484 |
acgattgtgatagacactcaagtacctgatgtataagttaaatactatccaagcctagtgtaagagtgaccacacagtagcaattttatcattggaaaat |
1832583 |
T |
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| Q |
321 |
acaattttaccccttttcatttcacttaagttttccggcagtaatccatatcttattattttgatttt |
388 |
Q |
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| T |
1832584 |
acaattttaccccttttcatttcacttaagttttccggcagtaatccatatcttattattttgatttt |
1832651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 21 - 388
Target Start/End: Original strand, 1866727 - 1867094
Alignment:
| Q |
21 |
gaaccaatggaaaatagataaatttcttcttatttcatctatgatttctttacctaaattttgaagtttaacccttcttaaattggatgtacaacttctt |
120 |
Q |
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| T |
1866727 |
gaaccaatggaaaatagataaatttcttcttatttcatctatgatttctttacctaaattttgaagtttaacccttcttaaattggatgtacaacttctt |
1866826 |
T |
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| Q |
121 |
ctctttggttgtaggtttcttttaatttggaccggtgaaagttgaggtccaacttggaccagttgaaatctgacctttgatataatattaattaatatag |
220 |
Q |
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| T |
1866827 |
ctctttggttgtaggtttcttttaatttggaccggtgaaagttgaggtccaacttggaccagttgaaatctgacctttgatataatattaattaatatag |
1866926 |
T |
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| Q |
221 |
acgattgtgatagacactcaagtacctgatgtataagttaaatactatccaagcctagtgtaagagtgaccacacagtagcaattttatcattggaaaat |
320 |
Q |
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| T |
1866927 |
acgattgtgatagacactcaagtacctgatgtataagttaaatactatccaagcctagtgtaagagtgaccacacagtagcaattttatcattggaaaat |
1867026 |
T |
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| Q |
321 |
acaattttaccccttttcatttcacttaagttttccggcagtaatccatatcttattattttgatttt |
388 |
Q |
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| T |
1867027 |
acaattttaccccttttcatttcacttaagttttccggcagtaatccatatcttattattttgatttt |
1867094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 153 - 219
Target Start/End: Complemental strand, 35534317 - 35534251
Alignment:
| Q |
153 |
cggtgaaagttgaggtccaacttggaccagttgaaatctgacctttgatataatattaattaatata |
219 |
Q |
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| T |
35534317 |
cggtgaaagttgaggttcaacttggactagttaaagtctgacctttgatatattaataattaatata |
35534251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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