View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18146_low_4 (Length: 307)
Name: NF18146_low_4
Description: NF18146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18146_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 3729866 - 3729569
Alignment:
| Q |
1 |
attgaattcatacatgtatgatatctttttctttttatagtttgtataaataatataacctct--tattttggtaaatgaataatgatgaagcttcatcg |
98 |
Q |
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| T |
3729866 |
attgaattcatacatgtatgatatcgttttctttttatagtttgtataaataatataacctctcttattttggcaaatgaataataatgaagcttcatcg |
3729767 |
T |
|
| Q |
99 |
ttcatgttttttccggtttagacgatgtaagtctgcaataggctactaaaaagtatttagcataaacaagaaaaatgtatttgttctaccaaattaaacc |
198 |
Q |
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| T |
3729766 |
ttcatgttttttccggtttagacgatgtaagtctgcaataggctactaaaaagtatttagcataaacaagaaaaatgtatttgttctaccaaattaaacc |
3729667 |
T |
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| Q |
199 |
ctcgaaaacatgtaccagggaagacacatggtgtactacatggaggataa-nnnnnnnnnagcataacaccaatattaaaaaattataggatgaaagt |
295 |
Q |
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| T |
3729666 |
ctcgaaaacatgtgccagggaagacacatggtgtactacatggaggataattttttttttagcataacaccaatattaaaaaattataggatgaaagt |
3729569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 138
Target Start/End: Complemental strand, 34821568 - 34821494
Alignment:
| Q |
64 |
tattttggtaaatgaataatgatgaagcttcatcgttcatgttttttccggtttagacgatgtaagtctgcaata |
138 |
Q |
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|||||||||||| ||| || || |||| ||||||||| ||||| ||||| || ||||| || ||||||||||||| |
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| T |
34821568 |
tattttggtaaaggaacaacgaagaagtttcatcgttgatgttgtttccagtgtagacaatataagtctgcaata |
34821494 |
T |
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