View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18146_low_5 (Length: 266)
Name: NF18146_low_5
Description: NF18146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18146_low_5 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 12 - 266
Target Start/End: Original strand, 5390682 - 5390936
Alignment:
| Q |
12 |
atcatcatggcacaatcttgtagactttagtcttgtcaatcgaactaatgaaagaattcttagaattcctaaatcccaagaatccatgttccttagcctt |
111 |
Q |
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|||||||||||||||||||||| |||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5390682 |
atcatcatggcacaatcttgtacactttagttttgtcaatccaactaatgaacacattcttagaattcctaaatcccaagaatccatgttccttagactt |
5390781 |
T |
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| Q |
112 |
gttcatactatccaacacaccctccactctcaacataaaatctgcaaaccaccaatctccaacttcttcaagcttggtgtgcaacaattcattctccctc |
211 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5390782 |
gttcatactatccaacacaccctccactctaaacataaaatctgcaaaccaccaatctccaacttcttcaagcttggtgtacaacaattcattctccctc |
5390881 |
T |
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| Q |
212 |
acaatctcttcccacacaccacccttatccttcatcaaatccgataacctcaact |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5390882 |
acaatctcttcccacacaccacccttatccttcatcaaatccgataacctcaact |
5390936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 15 - 266
Target Start/End: Original strand, 5399404 - 5399655
Alignment:
| Q |
15 |
atcatggcacaatcttgtagactttagtcttgtcaatcgaactaatgaaagaattcttagaattcctaaatcccaagaatccatgttccttagccttgtt |
114 |
Q |
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||||||||||||||||||| |||| ||||| |||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
5399404 |
atcatggcacaatcttgtaagcttttgtcttatcaatccaactaatgaacgaattcttagaattcctaaatcctaagaatccatgttccttagacttgtt |
5399503 |
T |
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| Q |
115 |
catactatccaacacaccctccactctcaacataaaatctgcaaaccaccaatctccaacttcttcaagcttggtgtgcaacaattcattctccctcaca |
214 |
Q |
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| T |
5399504 |
catactatccaacacaccctccactctaaacataaaatctgcaaaccaccaatctccaacttcttcaagcttggtgtacaacaattcattctccctcaca |
5399603 |
T |
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| Q |
215 |
atctcttcccacacaccacccttatccttcatcaaatccgataacctcaact |
266 |
Q |
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| T |
5399604 |
atctcttcccacacaccacccttatccttcatcaaatccgataacctcaact |
5399655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 266
Target Start/End: Original strand, 5394220 - 5394474
Alignment:
| Q |
12 |
atcatcatggcacaatcttgtagactttagtcttgtcaatcgaactaatgaaagaattcttagaattcctaaatcccaagaatccatgttccttagcctt |
111 |
Q |
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|||||||||||||||||||||| |||| |||||||||||| |||||||||| ||||||||||||||||||||||| | |||||||||||||||||| || |
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| T |
5394220 |
atcatcatggcacaatcttgtaagcttttgtcttgtcaatccaactaatgaatgaattcttagaattcctaaatcctatgaatccatgttccttagcttt |
5394319 |
T |
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| Q |
112 |
gttcatactatccaacacaccctccactctcaacataaaatctgcaaaccaccaatctccaacttcttcaagcttggtgtgcaacaattcattctccctc |
211 |
Q |
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||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5394320 |
gttcatagaatccaacacaccctccagtctcaaactaaaatctgcaaaccaccaatctccaacttcttcaagcttggtgtacaacaattcattctccctc |
5394419 |
T |
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| Q |
212 |
acaatctcttcccacacaccacccttatccttcatcaaatccgataacctcaact |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5394420 |
acaatctcttcccacacaccacccttatccttcatcaaatccgataacctcaact |
5394474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 264
Target Start/End: Original strand, 3818681 - 3818794
Alignment:
| Q |
151 |
atctgcaaaccaccaatctccaacttcttcaagcttggtgtgcaacaattcattctccctcacaatctcttcccacacaccacccttatccttcatcaaa |
250 |
Q |
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||||||||||||||| || |||||||||| ||||| || | ||| |||||||| |||||||||| ||||| ||| |||||||||||||||||| |
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| T |
3818681 |
atctgcaaaccaccactcagcaacttcttccagcttcgttacctgcaacccattctccttcacaatctcatcccaaacaggacccttatccttcatcaac |
3818780 |
T |
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| Q |
251 |
tccgataacctcaa |
264 |
Q |
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|||| |||| |||| |
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| T |
3818781 |
tccgttaacttcaa |
3818794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 264
Target Start/End: Complemental strand, 47339196 - 47339083
Alignment:
| Q |
151 |
atctgcaaaccaccaatctccaacttcttcaagcttggtgtgcaacaattcattctccctcacaatctcttcccacacaccacccttatccttcatcaaa |
250 |
Q |
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||||||||||||||| || |||||||||| ||||| || | ||| |||||||| |||||||||| ||||| ||| |||||||||||||||||| |
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| T |
47339196 |
atctgcaaaccaccactcagcaacttcttccagcttcgtcacctgcaacccattctccttcacaatctcatcccaaacaggacccttatccttcatcaac |
47339097 |
T |
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| Q |
251 |
tccgataacctcaa |
264 |
Q |
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|||| |||| |||| |
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| T |
47339096 |
tccgttaacttcaa |
47339083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 264
Target Start/End: Complemental strand, 47347615 - 47347553
Alignment:
| Q |
202 |
attctccctcacaatctcttcccacacaccacccttatccttcatcaaatccgataacctcaa |
264 |
Q |
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||||||| |||||||||| ||||| ||| |||||||||||||||||| ||||| ||| |||| |
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| T |
47347615 |
attctccttcacaatctcatcccaaacaggacccttatccttcatcaactccgacaacttcaa |
47347553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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