View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18147_low_1 (Length: 632)
Name: NF18147_low_1
Description: NF18147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18147_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 6697915 - 6697608
Alignment:
| Q |
1 |
acaggaacagagtcattcaataaagacaagtttaccaagtttgggacagaccccacccaagtcctatgagtctctgcatttaggcttcattaaagagaga |
100 |
Q |
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| T |
6697915 |
acaggaacagagtcattcaataaagacaagtttaccaagtttgggacagaccccacccaagtcctatgagtctctgcatttaggcttcattaaagagaga |
6697816 |
T |
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| Q |
101 |
agcacaaacaaacttgttattcaagttaatagctacaggctgtggtctttgtgataaatacaaggtttgatttagaacttgacaaggctttattaccact |
200 |
Q |
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| T |
6697815 |
aacacaaacgaacttgttattcaagttaatagctacaggctgtggtctttgtgataaatacaaggtttgatttagagcttgacaaggctttattaccact |
6697716 |
T |
|
| Q |
201 |
tgtaccaaacatttagtgcaaattgtgcttgtattgcataattatataagattccttttgggatcaagagaattggtcgtaaaattttgaggcctaaaac |
300 |
Q |
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| T |
6697715 |
tgtaccaaacatttagtgcaaattgtgcttgtattgcataattatataagattccttttgggatcaagagaattggtcttaaaattttgaggcctaaaac |
6697616 |
T |
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| Q |
301 |
cattggtg |
308 |
Q |
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| T |
6697615 |
cattggtg |
6697608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 336 - 622
Target Start/End: Complemental strand, 6697595 - 6697309
Alignment:
| Q |
336 |
accaagctgcattggtcgaacaacaagtggttatgtgtgatgcctattaatgctgatacataaatgaagagaatctgcacttttcagcagcagatggtaa |
435 |
Q |
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| T |
6697595 |
accaagctgcattggtcgaacaacaagtggttatgtgtgatgcctattaatgctaatgcataaatgaagagaatctgcaattttcagcagcagatggtaa |
6697496 |
T |
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| Q |
436 |
ttttaggggtctaggtaagtatcatttaagagctggtgtttgataaaatttaatcctgaaaaatgctgcaggctgtagactgtactgtttgttttttgtg |
535 |
Q |
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| T |
6697495 |
ttttaggggtctaggtaagtatcatttaagagctggtgtttgataaaatttaatcctgcaaaatgctgcaggttgtagactgtactgtttgttttttgtg |
6697396 |
T |
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| Q |
536 |
tttggtctctcatgtgaaggctaaattttttgaggttaacttttaggcttggtgagtcttgtgcttgtgtctttgaactgtattcat |
622 |
Q |
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| T |
6697395 |
tttggtctctcatgtgaaggctaaattttttgaggttaacttttaggcttggtgaatcttgtgcttgtgtctttgaactgtattcat |
6697309 |
T |
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