View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18147_low_2 (Length: 382)
Name: NF18147_low_2
Description: NF18147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18147_low_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 14 - 382
Target Start/End: Complemental strand, 26453464 - 26453084
Alignment:
| Q |
14 |
cctgtggagaaaaattctcccactagaacatgttctagcactgactgcattagaaaaagtacagaaaaggtaagaaaagcagtgagagaagaggtatatt |
113 |
Q |
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| T |
26453464 |
cctgtggagaacaattctcccactagaacatgttctagcactgactgcattagaaaaagtacagaaaaggtaagaaaagcagagagagaagaggtatatt |
26453365 |
T |
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| Q |
114 |
ggaaaatgagagaagaaatatgaggagcctacataaagtaaaat------------gagttctagcattggagnnnnnnnttcagtggttgttaaatcct |
201 |
Q |
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| T |
26453364 |
ggaaaatgagagaagaaatatgaggagcctacataaagtaaaataggaagtgtgttgagttctagcattggagaaaaaaattcagtggttgttaaatcct |
26453265 |
T |
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| Q |
202 |
acatggcatacttggacccacaatttagcagctaagaacaaaaaatttgttccagtgctttagaagctctaagattgatcggcacacccctttccattgc |
301 |
Q |
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| T |
26453264 |
acatggcatacttggacccacaatttagcagctaagaacaaaatatttgttccagtgctttagaagctccaagattgatcggcacacccctttccattgt |
26453165 |
T |
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| Q |
302 |
tcagcctatcagatcgtaacttctgctaaacaannnnnnnnctttaaagttggaccatattataggattcaatgcttgttt |
382 |
Q |
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| T |
26453164 |
tcagcctatcagatcgtaacttctgctaaacaattttttttctttaaagttggaccatattataggattcaatgcttgttt |
26453084 |
T |
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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 187 - 244
Target Start/End: Original strand, 47680531 - 47680588
Alignment:
| Q |
187 |
tggttgttaaatcctacatggcatacttggacccacaatttagcagctaagaacaaaa |
244 |
Q |
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| T |
47680531 |
tggttgttaaatcctacatggcatacttggacccaatatttagcagctaagaacaaaa |
47680588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 157
Target Start/End: Original strand, 47680406 - 47680488
Alignment:
| Q |
75 |
cagaaaaggtaagaaaagcagtgagagaagaggtatattggaaaatgagagaagaaatatgaggagcctacataaagtaaaat |
157 |
Q |
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| T |
47680406 |
cagaaaaagtaagagaaggggagagagaagaggtataatggatgataagagaagaaacacgagggtcctacataaagtaaaat |
47680488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 253
Target Start/End: Complemental strand, 11727258 - 11727230
Alignment:
| Q |
225 |
tttagcagctaagaacaaaaaatttgttc |
253 |
Q |
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| T |
11727258 |
tttagcagctaagaacaaaaaatttgttc |
11727230 |
T |
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