View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18147_low_4 (Length: 245)
Name: NF18147_low_4
Description: NF18147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18147_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 15 - 230
Target Start/End: Complemental strand, 32404793 - 32404578
Alignment:
| Q |
15 |
acagaacataacatgactgaaaaaagttatatgctttggttccatttctattttgcaacatactaaatttattttgattcatcttgaattcaaatatatt |
114 |
Q |
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| T |
32404793 |
acagaacataacatgactgaaaaaagttatatgctttggttccatttctattttgcaacatactaaatttattttgattcatcttgaattcaaatatatt |
32404694 |
T |
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| Q |
115 |
aaattgatagatattggaaaagttatggattttattatgaatgttagtacattcttctaacaattcaactgttaacattttctaagtgggtttgcatcaa |
214 |
Q |
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| T |
32404693 |
aaattgatagatattggaaaagttatggattttattatgaatgttagtacattcttctaacaattcaactgttaacattttctaagtgggtttgcatcaa |
32404594 |
T |
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| Q |
215 |
aattagatgcacttat |
230 |
Q |
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|||||||||||||||| |
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| T |
32404593 |
aattagatgcacttat |
32404578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 84 - 230
Target Start/End: Original strand, 8363849 - 8363994
Alignment:
| Q |
84 |
tattttgattcatcttgaattcaaatatattaaattgatagatattggaaaagttatggattttattatgaatgttagtacattcttctaacaattcaac |
183 |
Q |
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| T |
8363849 |
tattttgattcatcttgaattcaaatatattaaattgatagatattggaaaatttatggattttattatgaaggttggtacattcttctaacaattcaac |
8363948 |
T |
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| Q |
184 |
tgttaacattttctaagtgggtttgcatcaaaattagatgcacttat |
230 |
Q |
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| T |
8363949 |
ttttagtattgtcaaagtggatatgcatc-aaattagatgcacttat |
8363994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 98 - 230
Target Start/End: Original strand, 43654902 - 43655033
Alignment:
| Q |
98 |
ttgaattcaaatatattaaattgatagatattggaaaagttatggattttattatgaatgttagtacattcttctaacaattcaactgttaacattttct |
197 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||| |||| || |
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| T |
43654902 |
ttgaattcaaatatattaaattgatagatattggtaaagttatggattttattatgaaggttggtacattcttctaacaattcaacttttagcattgtca |
43655001 |
T |
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| Q |
198 |
aagtgggtttgcatcaaaattagatgcacttat |
230 |
Q |
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| T |
43655002 |
aagtggatatgcatc-aaattagatgcacttat |
43655033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 114
Target Start/End: Original strand, 43654823 - 43654853
Alignment:
| Q |
84 |
tattttgattcatcttgaattcaaatatatt |
114 |
Q |
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| T |
43654823 |
tattttgattcatcttgaattcaaatatatt |
43654853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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