View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18148_high_11 (Length: 281)
Name: NF18148_high_11
Description: NF18148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18148_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 43227294 - 43227558
Alignment:
| Q |
1 |
cataatggagaaaaaacaactgatccactcaaatttccttctatcttcatgagagacaccaaagtacattggaacataagtaaaagccaacttaacaaag |
100 |
Q |
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| T |
43227294 |
cataatggagaaaaaacaactgatccactcaaatttccttctatcttcatgagagacaccaaagtacattggaacataagtaaaagccaacttgacaaag |
43227393 |
T |
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| Q |
101 |
aaaaggaaaatgcttaacttgtacattcgactcatgaccattgatagatagtcacaacctgaaatcaaagaaagtagtaaaattatagcgaaatacatga |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43227394 |
aaaaggaaaatgcttaacttatacattcgactcatgaccattgatagatagtcacaacctgaaatcaaagaaagtagtaaaattatagcgaaatacatga |
43227493 |
T |
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| Q |
201 |
accnnnnnnncacaaaatgcagatttaattcaagggagaaataaacatgtttataataagttgtt |
265 |
Q |
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| T |
43227494 |
accaaaaaaacacaaaatgcagatttaattcaagggagaaataaacatgtttctaatatgttgtt |
43227558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 2 - 271
Target Start/End: Original strand, 43236803 - 43237084
Alignment:
| Q |
2 |
ataatggagaaaaaacaactgatccactcaaatttccttctatcttcatgagagacaccaaagtacattggaacataagtaaaagccaacttaacaaaga |
101 |
Q |
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| T |
43236803 |
ataatggagaaaaaacaacttgcccactcaaatatccttctatcttcgtaagggacaccgtagtactttgggacataagtaaaagccaaattaatgacaa |
43236902 |
T |
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| Q |
102 |
aaaggaaaatgcttaacttgtacattcgac---tcatgaccattgatagatagtcacaacctgaaatcaaagaaagtagtaaaattatagcgaaatacat |
198 |
Q |
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| T |
43236903 |
aaaataaaatgcttaacttgaacagtggacccaacaaggccattgatagatagtcacgacctaaattcaaggaaagtagtcaaattagagccaaatacat |
43237002 |
T |
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| Q |
199 |
gaacc---------nnnnnnncacaaaatgcagatttaattcaagggagaaataaacatgtttataataagttgttgatgat |
271 |
Q |
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| T |
43237003 |
aaaccaaaaaacaaaaaaaaacacaaaatgcagatttaattcaagggaaaattaaacatgtttataatatggtgttaatgat |
43237084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 43244980 - 43245165
Alignment:
| Q |
1 |
cataatggagaaaaaaca-actgatccactcaaatttccttctatcttcatgagagacaccaaagtacattggaacataagtaaaagccaacttaacaaa |
99 |
Q |
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|||||||||||||||| | ||| || ||||||||||||||| |||||| |||| ||||| |||||||||||| |||||||||||||||||||| | |
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| T |
43244980 |
cataatggagaaaaaaaagactaatgaactcaaatttccttcgatcttcttgaggaacaccgtagtacattggaatataagtaaaagccaacttaatgac |
43245079 |
T |
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| Q |
100 |
gaaaaggaaaatgcttaacttgtacattcgactcatgaccattgatagatagtcacaacctgaaatcaaagaaagtagtaaaatta |
185 |
Q |
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| T |
43245080 |
aaaaagcaaaatgcttaactggagtattcgacccagagccattgatagatagtcactacctaaattcaagtaaagtagtaaaatta |
43245165 |
T |
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