View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18148_high_14 (Length: 218)
Name: NF18148_high_14
Description: NF18148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18148_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 52 - 203
Target Start/End: Complemental strand, 35787493 - 35787340
Alignment:
| Q |
52 |
tctctctcatatataaaaa--taaacaaaattgcacaaccgccctattccaccattaacattgaaaccactttcatttcatcacagaagaaacaataaca |
149 |
Q |
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| T |
35787493 |
tctctctcatatataaaaaaataaacaaaattgcacaaccgccctattccaccattaacattgaaaccactttcatttcatcacagaagaaacaataaca |
35787394 |
T |
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| Q |
150 |
ctgaacgaggtaaccaagtagtcactctccatcttttcttttttcattcatctc |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35787393 |
ctgaacgaggtaaccaagtagtcactctccatcttttcttttttcattcatctc |
35787340 |
T |
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