View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18148_high_2 (Length: 458)
Name: NF18148_high_2
Description: NF18148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18148_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 421; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Complemental strand, 50276244 - 50275804
Alignment:
| Q |
1 |
tatgatgtgcatttctttagaactaatcattctttttaagcagcaaaatagatgattaatggatgattacattcatgtggcatcatgagaattaagaagg |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50276244 |
tatgatgtgcatttctttaaaactaatcattctttgtaagcagcaaaatagatgattaatggatgattacattcatgtggcatcatgagaattaagaagg |
50276145 |
T |
|
| Q |
101 |
cattttgcaaattaattatggagggatgtgagtatgtgactgatgaagtattttaaaccttcaggttcgatagcatttgatatggactatgctcgttggg |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
50276144 |
cattttgcaaattaattatggagggatgtgagtatgtgactgatgaagtattttaaaccttcaggttcggtagcatttgatatggactatgctcgttggg |
50276045 |
T |
|
| Q |
201 |
tagatgagcatcaacgactaatcaatgacataagatcagctataaattctcaaatgggcgataatgaactgcatcttcttgttgatggtgtcatggtaca |
300 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
50276044 |
tagacgagcatcaacgactaatcaatgacataagatcagctataaattctcaaatgggtgataatgaactgcatcttcttgttgatggtgtcatggtaca |
50275945 |
T |
|
| Q |
301 |
ttatgatgaattatacaagttgaagagcataggtgcaaaggctgatgtatttcacatactttctgggttgtggaagacacctgcagaaagatgtttcatg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50275944 |
ttatgatgaattatacaagttgaagagcataggtgcaaaggctgatgtatttcacatactttctgggttgtggaagacacctgcagaaagatgtttcatg |
50275845 |
T |
|
| Q |
401 |
tggcttggtggattccgttcatccgaacttctcaaggtgat |
441 |
Q |
| |
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| T |
50275844 |
tggcttggtggattccgttcatccgaacttctcaaggtgat |
50275804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Complemental strand, 50280268 - 50279828
Alignment:
| Q |
1 |
tatgatgtgcatttctttagaactaatcattctttttaagcagcaaaatagatgattaatggatgattacattcatgtggcatcatgagaattaagaagg |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50280268 |
tatgatgtgcatttctttaaaactaatcattctttgtaagcagcaaaatagatgattaatggatgattacattcatgtggcatcatgagaattaagaagg |
50280169 |
T |
|
| Q |
101 |
cattttgcaaattaattatggagggatgtgagtatgtgactgatgaagtattttaaaccttcaggttcgatagcatttgatatggactatgctcgttggg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
50280168 |
cattttgcaaattaattatggagggatgtgagtatgtgactgatgaagtattttaaaccttcaggttcggtagcatttgatatggactatgctcgttggg |
50280069 |
T |
|
| Q |
201 |
tagatgagcatcaacgactaatcaatgacataagatcagctataaattctcaaatgggcgataatgaactgcatcttcttgttgatggtgtcatggtaca |
300 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
50280068 |
tagacgagcatcaacgactaatcaatgacataagatcagctataaattctcaaatgggtgataatgaactgcatcttcttgttgatggtgtcatggtaca |
50279969 |
T |
|
| Q |
301 |
ttatgatgaattatacaagttgaagagcataggtgcaaaggctgatgtatttcacatactttctgggttgtggaagacacctgcagaaagatgtttcatg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50279968 |
ttatgatgaattatacaagttgaagagcataggtgcaaaggctgatgtatttcacatactttctgggttgtggaagacacctgcagaaagatgtttcatg |
50279869 |
T |
|
| Q |
401 |
tggcttggtggattccgttcatccgaacttctcaaggtgat |
441 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50279868 |
tggcttggtggattccgttcatccgaacttctcaaggtgat |
50279828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 50287912 - 50287709
Alignment:
| Q |
1 |
tatgatgtgcatttctttagaactaatcattctttttaagcagcaaaatagatgattaatggatgattacattcatgtggcatcatgagaattaagaagg |
100 |
Q |
| |
|
||||||||||||||||||| || |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50287912 |
tatgatgtgcatttctttataattaatcattctttgtaatcagcaaaatagatgattaatggatgattacattcatgtggcatcatgagaattaagaagg |
50287813 |
T |
|
| Q |
101 |
cattttgcaaattaattatggagggatgtgagtatgtgactgatgaagtattttaaaccttcaggttcgatagcatttgatatggactatgctcgttggg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
50287812 |
cattttgcaaattaattatggagggatgtgagtatgtgactgatgaagtattttaaaccttcaggttcggtagcatttgatatggactatgctcgttggg |
50287713 |
T |
|
| Q |
201 |
taga |
204 |
Q |
| |
|
|||| |
|
|
| T |
50287712 |
taga |
50287709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Original strand, 14462236 - 14462668
Alignment:
| Q |
1 |
tatgatgtgcatttctttagaactaatcattctttttaagcagcaaaatagatgattaatggatgattacattcatgtggcatcatgagaattaagaagg |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14462236 |
tatgatgtgcatttctttagaattaatcattctttgtaaacagcaaaatagatgattaatggatgattacattcatgtggcatcatgagaattaagaagg |
14462335 |
T |
|
| Q |
101 |
cattttgcaaattaattatggagggatgtgagtatgtgactgatgaagtattttaaaccttcaggttcgatagcatttgatatggactatgctcgttggg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
14462336 |
cattttgcaaattaattatggagggatgtgagtatgtgactgatgaagtattttaaaccttcaggttcggtagcatttgatatggactatgctcgttggg |
14462435 |
T |
|
| Q |
201 |
tagatgagcatcaacgactaatcaatgacataagatcagctataaattctcaaatgggcgataatgaactgca---tcttcttgttgatggtgtcatggt |
297 |
Q |
| |
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||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
14462436 |
tagatgagcatgaacgacaaatcaatgacataagatcagctataaattctcaaatgggcgataatgaactgcatcttcttcttgttgatggtgtcatggt |
14462535 |
T |
|
| Q |
298 |
acattatgatgaattatacaagttgaagagcataggtgcaaaggctgatgtatttcacatactttctgggttgtggaagacacctgcagaaagatgtttc |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14462536 |
acattatgatgaattatacaagttgaagagcataggtgcaaaggctgatgtatttcacatactttctgggttgtggaagacacctgcagaaagatgtttc |
14462635 |
T |
|
| Q |
398 |
atgtggcttggtggattccgttcatccgaactt |
430 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
14462636 |
atgtggcttggtggattccgttcatccgaactt |
14462668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 171 - 440
Target Start/End: Original strand, 22610014 - 22610283
Alignment:
| Q |
171 |
tagcatttgatatggactatgctcgttgggtagatgagcatcaacgactaatcaatgacataagatcagctataaattctcaaatgggcgataatgaact |
270 |
Q |
| |
|
|||||||||| ||||| || | | |||||| || ||||||||||| | ||||||| ||||||| || |||||||||||||||| ||||||||| | |
|
|
| T |
22610014 |
tagcatttgacatggaatacacccattgggttgacgagcatcaacgtatgctcaatgatctaagatcggcgttaaattctcaaatgggtgataatgaatt |
22610113 |
T |
|
| Q |
271 |
gcatcttcttgttgatggtgtcatggtacattatgatgaattatacaagttgaagagcataggtgcaaaggctgatgtatttcacatactttctgggttg |
370 |
Q |
| |
|
|||||| ||||| |||||||| ||| |||| || |||| |||| | ||| ||||||||||| |||||| |||||||||||||||| || | ||||||| |
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|
| T |
22610114 |
gcatctgcttgtcgatggtgttatgtcacatcataatgagttatttaggttaaagagcataggggcaaagactgatgtatttcacatgctctatgggttg |
22610213 |
T |
|
| Q |
371 |
tggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccgaacttctcaaggtga |
440 |
Q |
| |
|
||||||||||| | |||||||| ||| || |||| ||||| ||| |||||||| ||| |||||||||||| |
|
|
| T |
22610214 |
tggaagacaccagtagaaagattttttatttggcatggtgcatttcgttcatctgaaattctcaaggtga |
22610283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 440
Target Start/End: Original strand, 14931420 - 14931491
Alignment:
| Q |
369 |
tgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccgaacttctcaaggtga |
440 |
Q |
| |
|
||||||| |||||||| ||||| |||||| | ||||||||||| || || || || |||||||||||||||| |
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|
| T |
14931420 |
tgtggaaaacacctgctgaaaggtgtttcttatggcttggtggttttcggtcgtctgaacttctcaaggtga |
14931491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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