View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18148_high_4 (Length: 414)
Name: NF18148_high_4
Description: NF18148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18148_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 174 - 402
Target Start/End: Complemental strand, 48727714 - 48727485
Alignment:
| Q |
174 |
ttaataataacattaatcgcccttatttgaaacnnnnnnnn-tggatgaacatttccatacatcattttctcacacactagtaatgaagcagagtaacat |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48727714 |
ttaataataacattaatcgcccttatttgaaacagaaaaaaatggatgaacatttccatacatcattttctcacacactagtaatgaagcagagtaacat |
48727615 |
T |
|
| Q |
273 |
tatactcaagaatggcatcaccatttttgtaatcaaagaaatgtgtcttaacttgaacaaatcctctagccaatctaaattttcctcttccaccaacaac |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48727614 |
tatactcaagaatggcatcaccatttttgtaatcaaagaaatgtgtcttaacttgagcaaatcctctagccaatctaaattttcctcttccaccaacaac |
48727515 |
T |
|
| Q |
373 |
agccaattcacgaattggttcactcacagg |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
48727514 |
agccaattcacgaattggttcactcacagg |
48727485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 215 - 394
Target Start/End: Complemental strand, 48724817 - 48724638
Alignment:
| Q |
215 |
tggatgaacatttccatacatcattttctcacacactagtaatgaagcagagtaacattatactcaagaatggcatcaccatttttgtaatcaaagaaat |
314 |
Q |
| |
|
|||| ||| |||||||||||| ||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
48724817 |
tggaagaaaatttccatacattattttctcacacactagtagtgaagaagagtaacatgatactcaagaatggcatcaccatttttgtaattaagagaat |
48724718 |
T |
|
| Q |
315 |
gtgtcttaacttgaacaaatcctctagccaatctaaattttcctcttccaccaacaacagccaattcacgaattggttca |
394 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
48724717 |
gagtcttaacttgaacaaatcctctagcaaatctaaatttatctcttccaccaacaacagccaattcacgatttgtttca |
48724638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University