View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18148_high_8 (Length: 326)
Name: NF18148_high_8
Description: NF18148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18148_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 19 - 316
Target Start/End: Complemental strand, 49671838 - 49671541
Alignment:
| Q |
19 |
ccccatctggtgaaggtggagagggtggacacacatcttcttcaactctatgctcaggcacatccttcccactttcaattctcatcaacatcttcaaaac |
118 |
Q |
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| T |
49671838 |
ccccatctggtgaaggtggagagggtggacacacatcttcttcaactatatgctcaggcacatccttcccactttcaattctcatcaacatcttcaaaac |
49671739 |
T |
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| Q |
119 |
ctcttccatggaaggtctcaattccttgtccctttgcaaacattgaaaagctaactctgccaccgaaactatcatccgctttatctcattgtctgaatca |
218 |
Q |
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| T |
49671738 |
ctcttccatggaaggtctcaattccttgtccctttgcaaacattgaaaagctaactctgccaccgaaactatcatccgctttatctcattgtctgaatca |
49671639 |
T |
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| Q |
219 |
aaaccaagataaggatccaccaactcaattaatgcaccctcttgtattttctttaaggccaggtttgacaagttaatctcatccttatgcctgttcat |
316 |
Q |
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| T |
49671638 |
aaaccaagataaggatccaccaactcaattaatgcaccctcttgtattttctttaaggccaggtttgacaagttaatctcatccttatgcctcttcat |
49671541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 120 - 235
Target Start/End: Complemental strand, 49667766 - 49667651
Alignment:
| Q |
120 |
tcttccatggaaggtctcaattccttgtccctttgcaaacattgaaaagctaactctgccaccgaaactatcatccgctttatctcattgtctgaatcaa |
219 |
Q |
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|||||||| |||||||| || || |||||| |||||||||| |||||||| || |||||||| ||||||||||||| || | |||| ||||||||| || |
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| T |
49667766 |
tcttccatagaaggtcttaactctttgtccttttgcaaacactgaaaagccaattctgccactgaaactatcatcctattaacctcactgtctgaatgaa |
49667667 |
T |
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| Q |
220 |
aaccaagataaggatc |
235 |
Q |
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| T |
49667666 |
aaccaagagaaggatc |
49667651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 49683984 - 49683928
Alignment:
| Q |
103 |
tcaacatcttcaaaacctcttccatggaaggtctcaattccttgtccctttgcaaac |
159 |
Q |
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|||||| || ||||||||| ||||| ||||| |||||||||||||||| |||||||| |
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| T |
49683984 |
tcaacacctccaaaacctcatccattgaaggcctcaattccttgtcccgttgcaaac |
49683928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 178
Target Start/End: Complemental strand, 49675968 - 49675878
Alignment:
| Q |
88 |
cactttcaattctcatcaacatcttcaaaacctcttccatggaaggtctcaattccttgtccctttgcaaacattgaaaagctaactctgc |
178 |
Q |
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| T |
49675968 |
cactatcaattctcctcagcacgtccaaaacctcatccattgagggcctcaattccttatcccgctgcaaacactgaaaagccaactctgc |
49675878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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