View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18148_low_10 (Length: 315)
Name: NF18148_low_10
Description: NF18148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18148_low_10 |
 | |
|
| [»] scaffold0039 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 42 - 302
Target Start/End: Complemental strand, 29074152 - 29073892
Alignment:
| Q |
42 |
gagccatagacttggccgattgtatattcaatttcacatgaatccagcagcgcacatctgtttgaaggaaccgcacacatagaaagtattttatctaaca |
141 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
29074152 |
gagccatagactttgccgattgtatattcaatttcacatgaatgcagcagcgcacatctgtttgaaggaaccgcacacatagaaagtattttatataaca |
29074053 |
T |
|
| Q |
142 |
caaagcgtagtagaatagaacactaaagtcttacaaaaacaataaacccaacaagaccaggaaataaataaaaattcaatgataatattaatgtaattat |
241 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29074052 |
caaagcgtagtagaaaagaacactaaagtcttacaaaaacaataaaccgaacaagaccaggaaataaataaaaattcaatgataatattaatgtaattat |
29073953 |
T |
|
| Q |
242 |
tgcaaggattttggaggtaattattgcatcctgcccatgaatactcaagtcaattcatctc |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||| |
|
|
| T |
29073952 |
tgcaaggattttggaggtaattattgcatcctgccgatgaatacacaagtaaattcatctc |
29073892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 217
Target Start/End: Complemental strand, 29103505 - 29103404
Alignment:
| Q |
116 |
acacatagaaagtattttatctaacacaaagcgtagtagaatagaacactaaagtcttacaaaaacaataaacccaacaagaccaggaaataaataaaaa |
215 |
Q |
| |
|
|||||||||||||||| ||| || ||| ||||| |||||||||||||||||||||||||||| ||| ||||| ||||||| ||||||||||||||| |
|
|
| T |
29103505 |
acacatagaaagtattctatttagtgcaaggcgtattagaatagaacactaaagtcttacaaaagcaacaaaccgaacaagatttggaaataaataaaaa |
29103406 |
T |
|
| Q |
216 |
tt |
217 |
Q |
| |
|
|| |
|
|
| T |
29103405 |
tt |
29103404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 29105886 - 29105823
Alignment:
| Q |
42 |
gagccatagacttggccgattgtatattcaatttcacatgaatccagcagcgcacatctgtttg |
105 |
Q |
| |
|
||||||||||||| |||||||||||||||| || |||||||| ||||| ||||| |||||||| |
|
|
| T |
29105886 |
gagccatagactttgccgattgtatattcatattgacatgaatgcagcaacgcacgtctgtttg |
29105823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 55729 - 55789
Alignment:
| Q |
128 |
tattttatctaacacaaagcgtagtagaatagaacactaaagtcttacaaaaacaataaac |
188 |
Q |
| |
|
|||| ||||||||||| ||||| ||||||| ||||||| |||||||| ||||||| |||| |
|
|
| T |
55729 |
tattatatctaacacagtgcgtactagaataaaacactagagtcttacgaaaacaacaaac |
55789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University