View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18148_low_13 (Length: 264)
Name: NF18148_low_13
Description: NF18148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18148_low_13 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 4645825 - 4645562
Alignment:
| Q |
1 |
ccctctactacattgcctaattaaccactttctatgcttaattaatgatcttttattctatatgcaatataattcctatgatatgatgaaattcattcca |
100 |
Q |
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| T |
4645825 |
ccctctactacattgcctaattaaccactttctgtgcttaattaatgatcttttattctatatgcaatataattcctatgatatgatgaaattcattcca |
4645726 |
T |
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| Q |
101 |
agctagctatcttgtattttctcnnnnnnngttaattataataaattgcgtcatctcttattctgttcagaaaattttgttattgtttattttgattgtg |
200 |
Q |
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| T |
4645725 |
agctagctatcttgtattttctcaaataaagttaattataataaattgcgtcatgtcttattctgttcagaaaattttgttattgtttattttgattgtg |
4645626 |
T |
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| Q |
201 |
taacaacctacaaatacaaaaccatagaaaagagaaaaaatcattgggaactggatttgatatt |
264 |
Q |
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| T |
4645625 |
taacaacctacaaatacaaaaccatagaaaagagaaaaaatcattgggaactggatttgatatt |
4645562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 156 - 236
Target Start/End: Original strand, 23702720 - 23702803
Alignment:
| Q |
156 |
tcttattctgttcagaaaatt--ttgttatt-gtttattttgattgtgtaacaacctacaaatacaaaaccatagaaaagagaa |
236 |
Q |
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||||||||||||||||||||| ||||| || ||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
23702720 |
tcttattctgttcagaaaattggttgttgtttgtttattttgattgtgttataacctacaaatacaaaaccatagaaaagagaa |
23702803 |
T |
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