View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18148_low_14 (Length: 241)
Name: NF18148_low_14
Description: NF18148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18148_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 28320870 - 28321094
Alignment:
| Q |
1 |
ttcaccaatatcaaaaacctcacctttgttgcttttttcatttacataatccaataattcttgcaacttttgttggcgaagattttttgttgagtcaagc |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
28320870 |
ttcaccaatatcaaaaacctcacctttgttacttttttcattcacataatctaataattcttgcaacttttgttggcgaaggtttcttgttgagtcaagc |
28320969 |
T |
|
| Q |
101 |
atttttgtagaaaatacttttttagcacaacttttccttagtttcttccacaaatttaatgttggaacccatgcaactgagaatttgtcatgatcaactg |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28320970 |
atttttgtagaaaatacttttgtagcacaacttttccttagtttcttccacaaatttaatgttggaacccacccaactgagaatttgtcatgatcaactg |
28321069 |
T |
|
| Q |
201 |
caccaagtgcatgtggaacagttct |
225 |
Q |
| |
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|| | ||||||||| |||||||| |
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| T |
28321070 |
cagagattgcatgtgggacagttct |
28321094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 2 - 225
Target Start/End: Original strand, 28296809 - 28297032
Alignment:
| Q |
2 |
tcaccaatatcaaaaacctcacctttgttgcttttttcatttacataatccaataattcttgcaacttttgttggcgaagattttttgttgagtcaagca |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28296809 |
tcaccaatatcaaaaacctcacctttgttgcttttttcattcacataatccaataattcttgcaacttttgttggcgaaggttttttgttgagtcaagca |
28296908 |
T |
|
| Q |
102 |
tttttgtagaaaatacttttttagcacaacttttccttagtttcttccacaaatttaatgttggaacccatgcaactgagaatttgtcatgatcaactgc |
201 |
Q |
| |
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||||| |||||||||| ||| | |||||||||||||||||||||||||| ||| ||||||||||| ||| ||| |||||||||||||||||||||||| |
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| T |
28296909 |
tttttttagaaaatacatttgtggcacaacttttccttagtttcttccataaagctaatgttggaagccacccaattgagaatttgtcatgatcaactgc |
28297008 |
T |
|
| Q |
202 |
accaagtgcatgtggaacagttct |
225 |
Q |
| |
|
|| ||||||||||||||||||||| |
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| T |
28297009 |
actaagtgcatgtggaacagttct |
28297032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 2 - 225
Target Start/End: Complemental strand, 28288404 - 28288181
Alignment:
| Q |
2 |
tcaccaatatcaaaaacctcacctttgttgcttttttcatttacataatccaataattcttgcaacttttgttggcgaagattttttgttgagtcaagca |
101 |
Q |
| |
|
||||||||||||||| | ||||||||||||| |||||| |||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||| |
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| T |
28288404 |
tcaccaatatcaaaagcttcacctttgttgcatttttcctttacataatccaataatacttgtaacttttgttggcgaatgttttttgttgagtcaagca |
28288305 |
T |
|
| Q |
102 |
tttttgtagaaaatacttttttagcacaacttttccttagtttcttccacaaatttaatgttggaacccatgcaactgagaatttgtcatgatcaactgc |
201 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| ||| ||| ||||||||||| |||||||| ||| |
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| T |
28288304 |
tttttgtagaaaatacttttgtagcacaaattttccttagtttcttccacaaagctaatgttggaagccacccaagtgagaatttgttatgatcaagtgc |
28288205 |
T |
|
| Q |
202 |
accaagtgcatgtggaacagttct |
225 |
Q |
| |
|
| | ||||||||| |||||||| |
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| T |
28288204 |
atgtattgcatgtgggacagttct |
28288181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 2 - 212
Target Start/End: Original strand, 28331350 - 28331560
Alignment:
| Q |
2 |
tcaccaatatcaaaaacctcacctttgttgcttttttcatttacataatccaataattcttgcaacttttgttggcgaagattttttgttgagtcaagca |
101 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||| |
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|
| T |
28331350 |
tcaccaatatcaaaaacctctcctttgttgcttttttcattcacataatctaataattcttgcaacttttgttgacgaaggatttttgttgagtcaagca |
28331449 |
T |
|
| Q |
102 |
tttttgtagaaaatacttttttagcacaacttttccttagtttcttccacaaatttaatgttggaacccatgcaactgagaatttgtcatgatcaactgc |
201 |
Q |
| |
|
|||||||||||||||||| | |||||||| ||||||||||||||||||||||| ||||||||||| | | | ||||||||||| |||||||| ||| |
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| T |
28331450 |
tttttgtagaaaatacttgtgtagcacaaattttccttagtttcttccacaaagctaatgttggaagtgttcctattgagaatttgtgatgatcaagtgc |
28331549 |
T |
|
| Q |
202 |
accaagtgcat |
212 |
Q |
| |
|
|| || ||||| |
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|
| T |
28331550 |
acaaattgcat |
28331560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 3 - 225
Target Start/End: Original strand, 28310298 - 28310520
Alignment:
| Q |
3 |
caccaatatcaaaaacctcacctttgttgcttttttcatttacataatccaataattcttgcaacttttgttggcgaagattttttgttgagtcaagcat |
102 |
Q |
| |
|
||||||||||||||| ||||||||| || ||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||| | |
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| T |
28310298 |
caccaatatcaaaaatctcacctttcttacttttttcattcacataatctaataattcttgcaacttttgttggcgaaggatttttgttgagtcaagtac |
28310397 |
T |
|
| Q |
103 |
ttttgtagaaaatacttttttagcacaacttttccttagtttcttccacaaatttaatgttggaacccatgcaactgagaatttgtcatgatcaactgca |
202 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||||||| || ||||||||||| | ||| ||| |||||||||||||||| |||| |
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|
| T |
28310398 |
ttttgtagaaaatacttttgtagcacaaaatttccttagtttcttccatgaagctaatgttggaagcatcccaattgataatttgtcatgatcaagtgca |
28310497 |
T |
|
| Q |
203 |
ccaagtgcatgtggaacagttct |
225 |
Q |
| |
|
| |||||||||||| |||||||| |
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| T |
28310498 |
caaagtgcatgtgggacagttct |
28310520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 28304694 - 28304765
Alignment:
| Q |
2 |
tcaccaatatcaaaaacctcacctttgttgcttttttcatttacataatccaa-taattcttgcaacttttg |
72 |
Q |
| |
|
||||||||||||||||| |||||||||| || |||||| || ||||||||||| |||||||| |||||||| |
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|
| T |
28304694 |
tcaccaatatcaaaaacttcacctttgtagcctttttctttcacataatccaattaattcttttaacttttg |
28304765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 28336328 - 28336392
Alignment:
| Q |
5 |
ccaatatcaaaaacctcacctttgttgcttttttcatttacataatccaataattcttgcaactt |
69 |
Q |
| |
|
|||||||| ||||| |||||||||| |||| |||| || ||||||||||||||||||||||| |
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|
| T |
28336328 |
ccaatatctaaaacatcacctttgtaaaattttccattcacgtaatccaataattcttgcaactt |
28336392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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