View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18148_low_6 (Length: 372)

Name: NF18148_low_6
Description: NF18148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18148_low_6
NF18148_low_6
[»] chr8 (18 HSPs)
chr8 (1-372)||(8194294-8194665)
chr8 (62-208)||(8471889-8472036)
chr8 (64-236)||(7066121-7066295)
chr8 (64-226)||(8472668-8472832)
chr8 (64-236)||(18471177-18471351)
chr8 (64-263)||(33493777-33493975)
chr8 (64-208)||(32593514-32593659)
chr8 (172-264)||(8195128-8195220)
chr8 (63-237)||(32051604-32051780)
chr8 (82-234)||(541605-541759)
chr8 (64-157)||(32690288-32690382)
chr8 (183-234)||(32690186-32690237)
chr8 (62-132)||(33085280-33085350)
chr8 (172-232)||(43942009-43942069)
chr8 (315-371)||(6575199-6575255)
chr8 (296-372)||(21501159-21501235)
chr8 (105-191)||(20075654-20075743)
chr8 (127-171)||(539480-539525)
[»] chr2 (18 HSPs)
chr2 (68-264)||(17670133-17670330)
chr2 (68-224)||(17625746-17625903)
chr2 (64-262)||(24201232-24201431)
chr2 (64-264)||(23220958-23221157)
chr2 (61-226)||(2007088-2007253)
chr2 (64-232)||(14931879-14932049)
chr2 (113-234)||(37469247-37469370)
chr2 (65-208)||(33896770-33896914)
chr2 (93-190)||(25432744-25432842)
chr2 (65-198)||(13220086-13220220)
chr2 (86-229)||(35942057-35942200)
chr2 (64-232)||(11493767-11493946)
chr2 (183-234)||(816889-816940)
chr2 (62-132)||(3304543-3304613)
chr2 (183-232)||(818900-818949)
chr2 (334-372)||(17724569-17724607)
chr2 (64-115)||(38500599-38500650)
chr2 (168-232)||(3304647-3304711)
[»] chr1 (11 HSPs)
chr1 (172-372)||(27821757-27821957)
chr1 (64-264)||(45395795-45395998)
chr1 (63-240)||(25104718-25104896)
chr1 (127-261)||(1908252-1908388)
chr1 (63-236)||(37827839-37828014)
chr1 (64-264)||(14613883-14614084)
chr1 (64-236)||(32754916-32755090)
chr1 (72-179)||(46859625-46859733)
chr1 (1-63)||(42352252-42352314)
chr1 (172-226)||(24182548-24182602)
chr1 (314-372)||(41491066-41491124)
[»] chr7 (13 HSPs)
chr7 (64-264)||(23839292-23839493)
chr7 (127-264)||(1011469-1011608)
chr7 (127-264)||(1012331-1012470)
chr7 (64-208)||(28369273-28369418)
chr7 (73-234)||(22797523-22797685)
chr7 (87-231)||(7932306-7932450)
chr7 (64-228)||(321936-322102)
chr7 (64-234)||(38609281-38609460)
chr7 (63-201)||(5578952-5579095)
chr7 (64-232)||(39894794-39894962)
chr7 (62-208)||(3120758-3120905)
chr7 (142-208)||(29907250-29907316)
chr7 (314-372)||(24234807-24234865)
[»] chr4 (21 HSPs)
chr4 (63-264)||(39437172-39437374)
chr4 (63-234)||(41223927-41224099)
chr4 (64-264)||(49529487-49529684)
chr4 (66-261)||(50848100-50848298)
chr4 (72-232)||(44897902-44898064)
chr4 (63-236)||(47442023-47442198)
chr4 (64-243)||(37078261-37078441)
chr4 (64-232)||(37078990-37079159)
chr4 (149-264)||(32476571-32476686)
chr4 (64-224)||(28501848-28502004)
chr4 (114-229)||(6848624-6848741)
chr4 (98-233)||(22384006-22384143)
chr4 (61-139)||(16184702-16184780)
chr4 (143-208)||(16184959-16185024)
chr4 (315-372)||(20704819-20704876)
chr4 (142-209)||(13188117-13188184)
chr4 (64-131)||(50853897-50853964)
chr4 (337-372)||(13039187-13039222)
chr4 (297-360)||(14796667-14796730)
chr4 (145-208)||(34611947-34612010)
chr4 (142-208)||(47366230-47366296)
[»] chr5 (12 HSPs)
chr5 (108-277)||(4445511-4445681)
chr5 (64-264)||(4446382-4446584)
chr5 (273-368)||(22162886-22162981)
chr5 (60-205)||(27828359-27828505)
chr5 (79-208)||(7518870-7519000)
chr5 (64-232)||(43432094-43432264)
chr5 (94-224)||(27827527-27827663)
chr5 (183-234)||(22160285-22160336)
chr5 (183-234)||(22164736-22164787)
chr5 (105-172)||(27827436-27827504)
chr5 (187-234)||(39387622-39387669)
chr5 (62-132)||(23498396-23498466)
[»] chr6 (5 HSPs)
chr6 (66-236)||(15869354-15869526)
chr6 (183-234)||(20591902-20591953)
chr6 (172-232)||(20595522-20595580)
chr6 (297-368)||(12895542-12895613)
chr6 (142-207)||(34032662-34032727)
[»] chr3 (9 HSPs)
chr3 (64-236)||(20269863-20270037)
chr3 (64-234)||(48596778-48596952)
chr3 (142-207)||(28767459-28767524)
chr3 (72-171)||(26218774-26218874)
chr3 (69-234)||(109547-109714)
chr3 (107-208)||(40268360-40268462)
chr3 (87-191)||(55242349-55242454)
chr3 (66-128)||(28767648-28767710)
chr3 (314-372)||(55253809-55253867)
[»] scaffold0175 (1 HSPs)
scaffold0175 (315-371)||(32072-32128)
[»] scaffold0005 (1 HSPs)
scaffold0005 (297-360)||(43001-43064)


Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 8194294 - 8194665
Alignment:
Q  1 cttccttagcagtagatggaagtgcctgtgatgtgcaatagaacattgtatagttaacagtactgttaaagttaagagtctttaggtattcttttaattg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8194294 cttccttagcagtagatggaagtgcctgtgatgtgcaatagaacattgtatagttaacagtactgttaaagttaagagtctttaggtattcttttaattg 8194393  T
Q  101 taccacttcctagattgattgttattactccttgagtattcacttcctaggctagtgcttactaattaagcattcaatgcacttattgtaacaccattat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8194394 taccacttcctagattgattgttattactccttgagtattcacttcctaggctagtgcttactaattaagcattcaatgcacttattgtaacaccattat 8194493  T
Q  201 aaatacaatagtgtgatctcattatagacacacagagagtttacacagacttcacatattttacttggtatcagagcaaaacgttttaaatattgagaaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8194494 aaatacaatagtgtgatctcattatagacacacagagagtttacacagacttcacatattttacttggtatcagagcaaaacgttttaaatattgagaaa 8194593  T
Q  301 acttctgaacgacttttcatcaaaaatacccaagtacatctagaaaagtcatcaataaaagtaacaaaatat 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8194594 acttctgaacgacttttcatcaaaaatacccaagtacatctagaaaagtcatcaataaaagtaacaaaatat 8194665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 62 - 208
Target Start/End: Original strand, 8471889 - 8472036
Alignment:
Q  62 actgttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattca-cttcctaggctagtgctt 160  Q
    |||||||||||||||| ||||||| ||| | ||||||||||| |||||||||||||||||||||||||| | ||||||||| || |||||||||||||||    
T  8471889 actgttaaagttaagaatctttagatatccctttaattgtacaacttcctagattgattgttattactcgtagagtattcaactccctaggctagtgctt 8471988  T
Q  161 actaattaagcattcaatgcacttattgtaacaccattataaatacaa 208  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  8471989 actaattaagcattcaatgcacttattctaaaaccattataaatacaa 8472036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 64 - 236
Target Start/End: Complemental strand, 7066295 - 7066121
Alignment:
Q  64 tgttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattc-acttcctaggctagtgcttac 162  Q
    |||||||||||||| ||||||| ||||| ||||||| ||| ||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||    
T  7066295 tgttaaagttaagaatctttagatattcctttaattatacaacttcctagattgattgttgttactcctagagtattcaacttcctaggctagtgcttac 7066196  T
Q  163 taattaagcattcaatgcacttattgtaacaccattataaatacaa-tagtgtgatctcattatagacacacaga 236  Q
    |||| ||| |||||||||||| ||||||| | |||||||| |||||   ||||||||||||||||||||||||||    
T  7066195 taatgaagtattcaatgcactaattgtaaaatcattataattacaaggtgtgtgatctcattatagacacacaga 7066121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 64 - 226
Target Start/End: Original strand, 8472668 - 8472832
Alignment:
Q  64 tgttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattca-cttcctaggctagtgcttac 162  Q
    |||||||||||||| ||||||| ||| | ||||||||||| ||||||||||||| |||||||||||||  ||||||||| |||| |||||||||||||||    
T  8472668 tgttaaagttaagaatctttagatatccctttaattgtacaacttcctagattggttgttattactccaagagtattcaacttcttaggctagtgcttac 8472767  T
Q  163 taattaagcattcaatgcacttattgtaacaccattataaatacaa-tagtgtgatctcattata 226  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||   ||||||||||||||||    
T  8472768 taattaagcattcaatgcacctattgtaaaaccattataaatacaaggtgtgtgatctcattata 8472832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 64 - 236
Target Start/End: Complemental strand, 18471351 - 18471177
Alignment:
Q  64 tgttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattca-cttcctaggctagtgcttac 162  Q
    |||||||||||| | ||||||  | ||| ||||||||||| ||||||||||||||||||||||||| ||  ||||| || ||||||||| ||||||||||    
T  18471351 tgttaaagttaacaatctttacatgttcctttaattgtacaacttcctagattgattgttattacttctaaagtatacaacttcctagggtagtgcttac 18471252  T
Q  163 taattaagcattcaatgcacttattgtaacaccattataaatacaa-tagtgtgatctcattatagacacacaga 236  Q
    | ||||||||||||||||| |||| |||| ||||||||||||||||   ||||||||||||||||||||||||||    
T  18471251 tcattaagcattcaatgcatttatcgtaaaaccattataaatacaaggtgtgtgatctcattatagacacacaga 18471177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 64 - 263
Target Start/End: Complemental strand, 33493975 - 33493777
Alignment:
Q  64 tgttaaagttaagagtctttaggtat--tcttttaattgtaccacttcctagattgattgttattactccttgagtattc-acttcctaggctagtgctt 160  Q
    ||||||| |||||| ||||||| |||  || ||||||| ||| |||||||||||||| ||||||||||||| |||||||| |||| ||||||||||||||    
T  33493975 tgttaaaattaagaatctttagatatattcctttaattctacaacttcctagattgagtgttattactcctagagtattcaactttctaggctagtgctt 33493876  T
Q  161 actaattaagcattcaatgcacttattgtaacaccattataaatacaata-gtgtgatctcattatagacacacagagagtttacacagacttcacatat 259  Q
    ||||| | ||||||||||| | ||||||||| | |||||||||||||| | |||||||||||||||||||||    |||||||||||| |||| ||||||    
T  33493875 actaaat-agcattcaatgtatttattgtaaaatcattataaatacaagatgtgtgatctcattatagacac----agagtttacacatacttaacatat 33493781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 64 - 208
Target Start/End: Original strand, 32593514 - 32593659
Alignment:
Q  64 tgttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattca-cttcctaggctagtgcttac 162  Q
    ||||||| |||||| ||| ||| ||||| ||||||||||| |||||||||||||||||||  ||||||| |||||| || ||||||||||||||||||||    
T  32593514 tgttaaaattaagaatctatagatattcctttaattgtacaacttcctagattgattgttcctactcctagagtatacaacttcctaggctagtgcttac 32593613  T
Q  163 taattaagcattcaatgcacttattgtaacaccattataaatacaa 208  Q
    ||||||||||||||||| | ||||| ||| ||||||||||||||||    
T  32593614 taattaagcattcaatgtatttattataaaaccattataaatacaa 32593659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 172 - 264
Target Start/End: Original strand, 8195128 - 8195220
Alignment:
Q  172 attcaatgcacttattgtaacaccattataaatacaatagtgtgatctcattatagacacacagagagtttacacagacttcacatattttac 264  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8195128 attccatgtacttattgtaacaccattataaatacaatagtgtgatctcattataggcacacagagagtttacacagacttcacatattttac 8195220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 63 - 237
Target Start/End: Complemental strand, 32051780 - 32051604
Alignment:
Q  63 ctgttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattca-cttcctaggctagtgctta 161  Q
    |||||||| |||||| |||| || ||||| |||  || ||| |||  ||||||||||| ||||||||| | || ||| || |||||||||||||||||||    
T  32051780 ctgttaaaattaagaatcttcagatattcctttggttatacaactctctagattgatttttattactcttagactatacaacttcctaggctagtgctta 32051681  T
Q  162 ctaattaagcattcaatgcacttattgtaacaccattataaatacaa-tagtgtgatctcattatagacacacagag 237  Q
    |||||||||| ||||||| | ||||||||| ||||||||||||||||   || |||| |||||||||||||||||||    
T  32051680 ctaattaagcgttcaatgtatttattgtaaaaccattataaatacaaggtgtatgatatcattatagacacacagag 32051604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 82 - 234
Target Start/End: Complemental strand, 541759 - 541605
Alignment:
Q  82 ttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattca-cttcctaggctagtgcttactaattaagcattcaatgc 180  Q
    |||| ||||| ||||||||||    |||||| |||||||||| |||||  |  ||||| || |||||||| ||  ||||||||||||||||||| |||||    
T  541759 ttagatattcctttaattgtatagattcctatattgattgttcttacttttgaagtatacaacttcctagtctcttgcttactaattaagcattgaatgc 541660  T
Q  181 acttattgtaacaccattataaatacaa-tagtgtgatctcattatagacacaca 234  Q
    | ||||||||| || |||||||||| || | ||||||||||||||| ||||||||    
T  541659 atttattgtaaaacaattataaatagaagttgtgtgatctcattattgacacaca 541605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 64 - 157
Target Start/End: Complemental strand, 32690382 - 32690288
Alignment:
Q  64 tgttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattc-acttcctaggctagtg 157  Q
    ||||||| |||||| |||||||  |||| ||||||||||  ||||||||| |||||||||||||||||| |||||| | ||||||||||||||||    
T  32690382 tgttaaaattaagaatctttagacattcctttaattgtataacttcctaggttgattgttattactcctagagtatacaacttcctaggctagtg 32690288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 32690186 - 32690237
Alignment:
Q  183 ttattgtaacaccattataaatacaatagtgtgatctcattatagacacaca 234  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  32690186 ttattgtaacaccattataaatacaagggtgtgatctcattatagacacaca 32690237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 132
Target Start/End: Original strand, 33085280 - 33085350
Alignment:
Q  62 actgttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactcct 132  Q
    ||||||||| |||||| ||||||| | ||| ||||||||||| ||||||||||||||||| ||||||||||    
T  33085280 actgttaaaattaagaatctttagattttcctttaattgtactacttcctagattgattgctattactcct 33085350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 43942069 - 43942009
Alignment:
Q  172 attcaatgcacttattgtaacaccattataaatacaatagtgtgatctcattatagacaca 232  Q
    |||||||| | |||||||||||| | |||||||||||| ||||||||||||||||||||||    
T  43942069 attcaatgtatttattgtaacactagtataaatacaattgtgtgatctcattatagacaca 43942009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 315 - 371
Target Start/End: Original strand, 6575199 - 6575255
Alignment:
Q  315 tttcatcaaaaatacccaagtacatctagaaaagtcatcaataaaagtaacaaaata 371  Q
    |||||| |||||||||||||||||||| || || |||||||||||||||||| ||||    
T  6575199 tttcattaaaaatacccaagtacatcttgagaaatcatcaataaaagtaacataata 6575255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 296 - 372
Target Start/End: Complemental strand, 21501235 - 21501159
Alignment:
Q  296 agaaaacttctgaacgacttttcatcaaaaatacccaagtacatctagaaaagtcatcaataaaagtaacaaaatat 372  Q
    ||||||||||| ||| | ||||||| | ||||| || ||| ||||  ||||||||||||||||||||||||||||||    
T  21501235 agaaaacttcttaacaatttttcattacaaatatcctagttcatccggaaaagtcatcaataaaagtaacaaaatat 21501159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 191
Target Start/End: Complemental strand, 20075743 - 20075654
Alignment:
Q  105 acttcctagattgattgttattactccttga--gtattca-cttcctaggctagtgcttactaattaagcattcaatgcacttattgtaa 191  Q
    |||||||||||||||| |||||| ||||  |  |||| || |||||||||||| |||||||| ||||||||| ||||||| |||||||||    
T  20075743 acttcctagattgattcttattaatcctatatagtatacaacttcctaggctactgcttactcattaagcatccaatgcatttattgtaa 20075654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 539525 - 539480
Alignment:
Q  127 actccttgagtattca-cttcctaggctagtgcttactaattaagc 171  Q
    |||||| ||||||||| ||||||||||||||||||||||| |||||    
T  539525 actcctagagtattcaacttcctaggctagtgcttactaaataagc 539480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 142; Significance: 2e-74; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 68 - 264
Target Start/End: Original strand, 17670133 - 17670330
Alignment:
Q  68 aaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattca-cttcctaggctagtgcttactaat 166  Q
    |||||||||| ||||||| ||||  ||||| ||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  17670133 aaagttaagaatctttagatatttgtttaactgtacaacttcctagattgattgttattactcctagagtattcaacttcctaggctagtgcttactaat 17670232  T
Q  167 taagcattcaatgcacttattgtaacaccattataaatacaatagtgtgatctcattatagacacacagagagtttacacagacttcacatattttac 264  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| || |||||||||||    
T  17670233 taagcattcaatgcacttattgtaaaaccattataaatacaatagcgtgatctcattatagacacacagagagtttactcagattttacatattttac 17670330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 68 - 224
Target Start/End: Original strand, 17625746 - 17625903
Alignment:
Q  68 aaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattca-cttcctaggctagtgcttactaat 166  Q
    |||||||||| ||||||| ||||  ||||| ||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  17625746 aaagttaagaatctttagatatttgtttaactgtacaacttcctagattgattgttattactcctagagtattcaacttcctaggctagtgcttactaat 17625845  T
Q  167 taagcattcaatgcacttattgtaacaccattataaatacaatagtgtgatctcatta 224  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  17625846 taagcattcaatgcacttattgtaaaaccattataaatacaatagtgtgatctcatta 17625903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 64 - 262
Target Start/End: Original strand, 24201232 - 24201431
Alignment:
Q  64 tgttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattca-cttcctaggctagtgcttac 162  Q
    |||||||||||||| ||||||| ||| | ||||||||||| |||||||||||||||||| || |||||| ||||||||| ||||||||||||||||||||    
T  24201232 tgttaaagttaagaatctttagatatccctttaattgtacaacttcctagattgattgt-ataactcctagagtattcaacttcctaggctagtgcttac 24201330  T
Q  163 taattaagcattcaatgcacttattgtaacaccattataaatacaa-tagtgtgatctcattatagacacacagagagtttacacagacttcacatattt 261  Q
    ||| ||||||||||||| | |||||||||  |||||||||||||||   ||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  24201331 taaataagcattcaatgtatttattgtaaagccattataaatacaagctgtgtgatctcattattgatacacagagagtttacacagacttcacatattt 24201430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 64 - 264
Target Start/End: Original strand, 23220958 - 23221157
Alignment:
Q  64 tgttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattc-acttcctaggctagtgcttac 162  Q
    ||||||| |||||| ||||||| ||||| ||||||||||| ||||||||||||||||| |||||||||| |||||||| |||||||| ||||||||||||    
T  23220958 tgttaaaattaagaatctttagatattcctttaattgtacaacttcctagattgattgatattactcctagagtattcaacttcctatgctagtgcttac 23221057  T
Q  163 taattaagcattcaatgcacttattgtaacaccattataaatacaa-tagtgtgatctcattatagacacacagagagtttacacagacttcacatattt 261  Q
    |||||||||||||||||||||||  | || ||||||||||||||||   |||||||||||||||||||||||  | ||||||||||||||| ||||||||    
T  23221058 taattaagcattcaatgcacttacgggaaaaccattataaatacaaggtgtgtgatctcattatagacacac--acagtttacacagactt-acatattt 23221154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 61 - 226
Target Start/End: Complemental strand, 2007253 - 2007088
Alignment:
Q  61 tactgttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattc-acttcctaggctagtgct 159  Q
    |||||||||| |||||| ||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||  ||||| | | ||||||||||| ||||    
T  2007253 tactgttaaaattaagaatctttagatattcctttaattgtacaacttcctagattgattgttattactcctatagtatacaatttcctaggctaatgct 2007154  T
Q  160 tactaattaagcattcaatgcacttattgtaacaccattataaatacaatagtgtgatctcattata 226  Q
    |||||||||||||||| ||| | ||||||||| ||||||||||||||||  |||||||| |||||||    
T  2007153 tactaattaagcattcgatgtatttattgtaaaaccattataaatacaa-ggtgtgatcccattata 2007088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 64 - 232
Target Start/End: Complemental strand, 14932049 - 14931879
Alignment:
Q  64 tgttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattca-cttcctaggctagtgcttac 162  Q
    ||||||| |||||| ||||||| ||||  ||||||||||| ||||||||| |||||| ||||||||||| |||||| || ||||||||||||||||||||    
T  14932049 tgttaaaattaagaatctttagatatttctttaattgtacaacttcctaggttgatttttattactcctagagtatacatcttcctaggctagtgcttac 14931950  T
Q  163 taattaagcattcaatgcacttattgtaacaccattataaatacaata-gtgtgatctcattatagacaca 232  Q
    | ||||| ||| ||||||| ||||||||| ||||||| || ||||| | ||||||||||||||||||||||    
T  14931949 tcattaaacatgcaatgcatttattgtaaaaccattaaaagtacaacatgtgtgatctcattatagacaca 14931879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 113 - 234
Target Start/End: Complemental strand, 37469370 - 37469247
Alignment:
Q  113 gattgattgttattactccttgagtattca-cttcctaggctagtgcttactaattaagcattcaatgcacttattgtaacaccattataaatacaatag 211  Q
    |||||||||||||||||||| |||||| || ||||||||||||||||||| ||||||||||||||||| | ||||||||| |||||||||||||||| ||    
T  37469370 gattgattgttattactcctagagtatacaacttcctaggctagtgcttattaattaagcattcaatgtatttattgtaaaaccattataaatacaa-ag 37469272  T
Q  212 --tgtgatctcattatagacacaca 234  Q
      |||||||||||||||||| ||||    
T  37469271 tctgtgatctcattatagacccaca 37469247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 65 - 208
Target Start/End: Complemental strand, 33896914 - 33896770
Alignment:
Q  65 gttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattc-acttcctaggctagtgcttact 163  Q
    |||||| |||||| ||| ||| ||||| |||||||||||  ||||||||||||||| || ||||| || |||||| | ||||| ||||||||||||||||    
T  33896914 gttaaaattaagaatctctagatattcctttaattgtacagcttcctagattgattatttttactgctagagtatactacttcttaggctagtgcttact 33896815  T
Q  164 aattaagcattcaatgcacttattgtaacaccattataaatacaa 208  Q
    |||||||||||||||| | ||||||| | ||||||||||||||||    
T  33896814 aattaagcattcaatgtatttattgttaaaccattataaatacaa 33896770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 93 - 190
Target Start/End: Complemental strand, 25432842 - 25432744
Alignment:
Q  93 tttaattgtaccacttcctagattgattgttattactccttgagtattc-acttcctaggctagtgcttactaattaagcattcaatgcacttattgta 190  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||| | | |||||||||||||||||||||| ||||||||||||| | ||||||||    
T  25432842 tttaattgtacaacttcctagattgattgttattactcctagagtatacaatttcctaggctagtgcttactaaataagcattcaatgtatttattgta 25432744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 65 - 198
Target Start/End: Complemental strand, 13220220 - 13220086
Alignment:
Q  65 gttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattc-acttcctaggctagtgcttact 163  Q
    |||||| |||||| ||||||| ||||| ||||||||||| ||||||||| || ||||||||||||||| |||||| | ||||| |||||||||| | |||    
T  13220220 gttaaaattaagaatctttagatattcctttaattgtacaacttcctagtttaattgttattactcctagagtatacaacttcttaggctagtgttcact 13220121  T
Q  164 aattaagcattcaatgcacttattgtaacaccatt 198  Q
     ||||||||||| ||||| ||||||| | ||||||    
T  13220120 tattaagcattctatgcatttattgttaaaccatt 13220086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 229
Target Start/End: Complemental strand, 35942200 - 35942057
Alignment:
Q  86 gtattcttttaattgtaccacttcctagattgattgttattactccttgagtattca-cttcctaggctagtgcttactaattaagcattcaatgcactt 184  Q
    |||||||||| | | ||| ||||||||||||||||||||||| |||| |||||  || ||||||||| ||| ||||| | ||||||||| ||||| | ||    
T  35942200 gtattcttttcactatacaacttcctagattgattgttattattcctagagtaaacaacttcctaggttagggcttattcattaagcatccaatgtattt 35942101  T
Q  185 attgtaacaccattataaatacaatagtgtgatctcattatagac 229  Q
    |||||||||| |||||||||||||   |||||||||| |||||||    
T  35942100 attgtaacactattataaatacaa-gttgtgatctcagtatagac 35942057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 64 - 232
Target Start/End: Original strand, 11493767 - 11493946
Alignment:
Q  64 tgttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattca--------cttcctaggctag 155  Q
    ||||||| |||||| |||| ||  |||  ||||||||||| ||||||||||||  |||||||||||||| || ||| ||        |||||||||||||    
T  11493767 tgttaaaattaagaatcttaagaaattactttaattgtacaacttcctagatttgttgttattactcctagaatatacattagacaacttcctaggctag 11493866  T
Q  156 tgcttactaatt-aagcattcaatgcac-ttattgtaacaccattataaatacaa-tagtgtgatctcattatagacaca 232  Q
    |||||||| ||| ||||||||||||||| |||||| || ||||||||||||||||   ||||| ||||||||||||||||    
T  11493867 tgcttactcattaaagcattcaatgcactttattgcaaaaccattataaatacaaggtgtgtggtctcattatagacaca 11493946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 816940 - 816889
Alignment:
Q  183 ttattgtaacaccattataaatacaatagtgtgatctcattatagacacaca 234  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  816940 ttattgtaacactagtataaatacaatagtgtgatctcattatagacacaca 816889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 62 - 132
Target Start/End: Original strand, 3304543 - 3304613
Alignment:
Q  62 actgttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactcct 132  Q
    ||||| ||| ||| || |||| || ||||| ||||||||||| ||||||||||||||||||||||||||||    
T  3304543 actgtaaaaattaggaatcttcagatattcctttaattgtacaacttcctagattgattgttattactcct 3304613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 232
Target Start/End: Complemental strand, 818949 - 818900
Alignment:
Q  183 ttattgtaacaccattataaatacaatagtgtgatctcattatagacaca 232  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||    
T  818949 ttattgtaacactggtataaatacaatagtgtgatctcattatagacaca 818900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 334 - 372
Target Start/End: Complemental strand, 17724607 - 17724569
Alignment:
Q  334 gtacatctagaaaagtcatcaataaaagtaacaaaatat 372  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  17724607 gtacatctagaaaactcatcaataaaagtaacaaaatat 17724569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 38500599 - 38500650
Alignment:
Q  64 tgttaaagttaagagtctttaggtattcttttaattgtaccacttcctagat 115  Q
    ||||||| |||||| ||||||| ||||| ||||||||||| |||||||||||    
T  38500599 tgttaaaattaagaatctttagatattcctttaattgtacaacttcctagat 38500650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 3304647 - 3304711
Alignment:
Q  168 aagcattcaatgcacttattgtaacaccattataaatacaa-tagtgtgatctcattatagacaca 232  Q
    |||||||||||||| ||||||||| |||| |||||||||||   |||||| |||||||||||||||    
T  3304647 aagcattcaatgcaattattgtaaaacca-tataaatacaaggtgtgtgacctcattatagacaca 3304711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 130; Significance: 3e-67; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 172 - 372
Target Start/End: Original strand, 27821757 - 27821957
Alignment:
Q  172 attcaatgcacttattgtaacaccattataaatacaatagtgtgatctcattatagacacacagagagtttacacagacttcacatattttacttggtat 271  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| | | || ||||||| || ||||||||||  ||||||    
T  27821757 attcaatgtatttattgtaacaccattataaatacaatagtgtgatctcattatagacacacaaata-ttcacacagaatttacatattttatatggtat 27821855  T
Q  272 cagagcaaaacgttttaaatattgagaaaacttctgaacgacttttcatcaaaa-atacccaagtacatctagaaaagtcatcaataaaagtaacaaaat 370  Q
    |||||||||| |||||||| ||||||||||||||||||||| ||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  27821856 cagagcaaaaagttttaaacattgagaaaacttctgaacgatttttcattaaaatatactcaagtacatctagaaaagtcatcaataaaagtaacaaaat 27821955  T
Q  371 at 372  Q
    ||    
T  27821956 at 27821957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 64 - 264
Target Start/End: Original strand, 45395795 - 45395998
Alignment:
Q  64 tgttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattca-cttcctaggctagtgcttac 162  Q
    |||||||||||||| ||||||| ||| | ||||||||||| |||||||||||||||||| || |||||| ||||||||| ||||||||||||||||||||    
T  45395795 tgttaaagttaagaatctttagatatccctttaattgtacgacttcctagattgattgt-ataactcctagagtattcaacttcctaggctagtgcttac 45395893  T
Q  163 taattaagcattcaatgcacttattgtaacaccattataaatacaa-tagtgtgatctcattatagacacacagagagttt--acacagacttcacatat 259  Q
    ||| ||||||||||||| | |||||||||  |||||||||||||||   ||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  45395894 taaataagcattcaatgtatttattgtaaagccattataaatacaagctgtgtgatctcattatagacacacagagagtttacacacagacttcacatat 45395993  T
Q  260 tttac 264  Q
    |||||    
T  45395994 tttac 45395998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 63 - 240
Target Start/End: Complemental strand, 25104896 - 25104718
Alignment:
Q  63 ctgttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattca-cttcctaggctagtgctta 161  Q
    ||||||||||||||| ||||||| ||| | ||||||||||| |||||||||||||||| | || |||||| ||||||||| |||||||||||||||||||    
T  25104896 ctgttaaagttaagaatctttagatatccctttaattgtacaacttcctagattgattat-ataactcctagagtattcaacttcctaggctagtgctta 25104798  T
Q  162 ctaattaagcattcaatgcacttattgtaacaccattataaatacaa-tagtgtgatctcattatagacacacagagagt 240  Q
    |||| ||||||||||||| | |||||||||  |||||||||||||||   |||||||||||||||||||||||| |||||    
T  25104797 ctaaataagcattcaatgtatttattgtaaagccattataaatacaagctgtgtgatctcattatagacacacacagagt 25104718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 127 - 261
Target Start/End: Original strand, 1908252 - 1908388
Alignment:
Q  127 actccttgagtattca-cttcctaggctagtgcttactaattaagcattcaatgcacttattgtaacaccattataaatacaata-gtgtgatctcatta 224  Q
    |||||| ||||||||| ||||||||||||||||||||||| ||||||||||||| | |||||||||  |||||||||||||||   ||||||||||||||    
T  1908252 actcctagagtattcaacttcctaggctagtgcttactaaataagcattcaatgtatttattgtaaagccattataaatacaagctgtgtgatctcatta 1908351  T
Q  225 tagacacacagagagtttacacagacttcacatattt 261  Q
    |||||||||||||||||||||||||||||||||||||    
T  1908352 tagacacacagagagtttacacagacttcacatattt 1908388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 63 - 236
Target Start/End: Original strand, 37827839 - 37828014
Alignment:
Q  63 ctgttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattca-cttcctaggctagtgctta 161  Q
    |||| ||| |||||| ||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||  | ||| || |||||||||||||||||||    
T  37827839 ctgtaaaaattaagaatctttagatattcatttaattgtacaacttcctagatcgattgttattactcctacaatatacaacttcctaggctagtgctta 37827938  T
Q  162 ctaattaagcattcaatgcacttattgtaacaccattataaatacaa-tagtgtgatctcattatagacacacaga 236  Q
    || |||||||||| |||||  ||||||||| ||||||||||||||||   ||||||||||||||||||||||||||    
T  37827939 cttattaagcattgaatgcttttattgtaaaaccattataaatacaaggtgtgtgatctcattatagacacacaga 37828014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 64 - 264
Target Start/End: Original strand, 14613883 - 14614084
Alignment:
Q  64 tgttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattca-cttcctaggctagtgcttac 162  Q
    |||||||||||||| ||||||| ||| | ||||||||||| ||||  |||||||||||| || |||||| ||||||||| ||| ||||||| ||||||||    
T  14613883 tgttaaagttaagaatctttagatatccctttaattgtacaactttttagattgattgt-ataactcctagagtattcaactttctaggctggtgcttac 14613981  T
Q  163 taattaagcattcaatgcacttattgtaacaccattataaatacaata-gtgtgatctcattatagacacacagagagtttacacagacttcacatattt 261  Q
    ||| |||| ||| | || | |||||||||  |||||||||||||||   |||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  14613982 taaataagtatttagtgtatttattgtaaagccattataaatacaagctgtgtgatctcattatagacacacatagagtttacacatacttcacatattt 14614081  T
Q  262 tac 264  Q
    |||    
T  14614082 tac 14614084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 64 - 236
Target Start/End: Complemental strand, 32755090 - 32754916
Alignment:
Q  64 tgttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattc-acttcctaggctagtgcttac 162  Q
    ||||||| |||||| |||| || ||||| | ||||||||  |||||||||||||||||||||||||||| |||||| | ||||||| || ||||||||||    
T  32755090 tgttaaaattaagaatcttcagatattcctctaattgtaaaacttcctagattgattgttattactcctagagtatacaacttccttgggtagtgcttac 32754991  T
Q  163 taattaagcattcaatgcacttattgtaacaccattataaatacaa-tagtgtgatctcattatagacacacaga 236  Q
    ||| ||||||||||||  | ||||||||| ||||||||||||||||   |||||||||||||||||||| |||||    
T  32754990 taaataagcattcaatttatttattgtaaaaccattataaatacaaggtgtgtgatctcattatagacagacaga 32754916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 72 - 179
Target Start/End: Complemental strand, 46859733 - 46859625
Alignment:
Q  72 ttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattc-acttcctaggctagtgcttactaattaag 170  Q
    |||||| ||||||| ||||| ||||||||||| ||||||||||||||||||| |||||||| |||||| | |||| |||| |||||||| ||||||||||    
T  46859733 ttaagaatctttagatattcctttaattgtacaacttcctagattgattgttgttactcctagagtatacaactttctagcctagtgctcactaattaag 46859634  T
Q  171 cattcaatg 179  Q
     ||||||||    
T  46859633 gattcaatg 46859625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 42352252 - 42352314
Alignment:
Q  1 cttccttagcagtagatggaagtgcctgtgatgtgcaatagaacattgtatagttaacagtac 63  Q
    ||||||||||| | ||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  42352252 cttccttagcaatggatggaagtgcctgtgatgtgcagtagaagattgtatagttaacagtac 42352314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 24182602 - 24182548
Alignment:
Q  172 attcaatgcacttattgtaacaccattataaatacaatagtgtgatctcattata 226  Q
    |||||||| | ||||| || ||||||||||||||||||||||| |||||||||||    
T  24182602 attcaatgtatttattataccaccattataaatacaatagtgtcatctcattata 24182548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 372
Target Start/End: Original strand, 41491066 - 41491124
Alignment:
Q  314 ttttcatcaaaaatacccaagtacatctagaaaagtcatcaataaaagtaacaaaatat 372  Q
    ||||||| ||||||| ||| || || | ||||||||||||||||||||| |||||||||    
T  41491066 ttttcattaaaaataaccatgtgcaacgagaaaagtcatcaataaaagtgacaaaatat 41491124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 1e-60; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 64 - 264
Target Start/End: Original strand, 23839292 - 23839493
Alignment:
Q  64 tgttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattca-cttcctaggctagtgcttac 162  Q
    |||||||||||||| ||||||| ||||| ||| ||| ||| |||||||||||||||||| || |||||| ||||||| | ||||||||||||||||||||    
T  23839292 tgttaaagttaagaatctttagatattcctttgattatacaacttcctagattgattgt-ataactcctagagtatttaacttcctaggctagtgcttac 23839390  T
Q  163 taattaagcattcaatgcacttattgtaacaccattataaatacaa-tagtgtgatctcattatagacacacagagagtttacacagacttcacatattt 261  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||| ||||||||| |||||| || |||||||||||    
T  23839391 taattaagcattcaatgcacttattgtaaaaccattataaatacaagttgtgtgatctcattatagacgcacagagagcttacacggatttcacatattt 23839490  T
Q  262 tac 264  Q
    |||    
T  23839491 tac 23839493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 127 - 264
Target Start/End: Original strand, 1011469 - 1011608
Alignment:
Q  127 actccttgagtattca-cttcctaggctagtgcttactaattaagcattcaatgcacttattgtaacaccattataaatacaata-gtgtgatctcatta 224  Q
    |||||| ||||||||| ||||||||||||||||||||||| ||||||||||||| | |||||||||  |||||||||||||||   ||||||||||||||    
T  1011469 actcctagagtattcaacttcctaggctagtgcttactaaataagcattcaatgtatttattgtaaagccattataaatacaagctgtgtgatctcatta 1011568  T
Q  225 tagacacacagagagtttacacagacttcacatattttac 264  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  1011569 tagacacacagagggtttacacagacttcacatattttac 1011608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 127 - 264
Target Start/End: Original strand, 1012331 - 1012470
Alignment:
Q  127 actccttgagtattca-cttcctaggctagtgcttactaattaagcattcaatgcacttattgtaacaccattataaatacaata-gtgtgatctcatta 224  Q
    |||||| ||||||||| ||||||||||||||||||||||| ||||||||||||| | |||||||||  |||||||||||||||   ||||||||||||||    
T  1012331 actcctagagtattcaacttcctaggctagtgcttactaaataagcattcaatgtatttattgtaaagccattataaatacaagctgtgtgatctcatta 1012430  T
Q  225 tagacacacagagagtttacacagacttcacatattttac 264  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  1012431 tagacacacagagggtttacacagacttcacatattttac 1012470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 64 - 208
Target Start/End: Original strand, 28369273 - 28369418
Alignment:
Q  64 tgttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattc-acttcctaggctagtgcttac 162  Q
    ||||||| |||||| ||||||| ||||| ||||||||||| |||||||||||||||||  ||||||||| |||||| | |||||| ||||||||||||||    
T  28369273 tgttaaaattaagaatctttagatattcctttaattgtacaacttcctagattgattgccattactcctagagtatacaacttccgaggctagtgcttac 28369372  T
Q  163 taattaagcattcaatgcacttattgtaacaccattataaatacaa 208  Q
    || ||||||| |||||| | ||||||||| ||||||||||||||||    
T  28369373 tagttaagcactcaatgtatttattgtaaaaccattataaatacaa 28369418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 73 - 234
Target Start/End: Original strand, 22797523 - 22797685
Alignment:
Q  73 taagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattca-cttcctaggctagtgcttactaattaagc 171  Q
    ||||| ||||||| |||||||| ||| |||| ||| |||||||||||||||||||| ||| |||||| || ||||||| ||||||| ||||| |||||||    
T  22797523 taagaatctttagatattcttt-aatggtacaactccctagattgattgttattacccctagagtatacaacttcctaagctagtgtttactcattaagc 22797621  T
Q  172 attcaatgcacttattgtaacaccattataaatacaa-tagtgtgatctcattatagacacaca 234  Q
    |||||||| | ||||||||| ||||||||||||||||   ||||||||||||||||||||||||    
T  22797622 attcaatgtatttattgtaaaaccattataaatacaaggtgtgtgatctcattatagacacaca 22797685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 87 - 231
Target Start/End: Original strand, 7932306 - 7932450
Alignment:
Q  87 tattcttttaattgtaccacttcctagattgattgttattactccttgagtattca-cttcctaggctagtgcttactaattaagcattcaatgcactta 185  Q
    ||||| ||||||||||| |||||||||||||||||| | |||||||  ||||| || ||||||||||||||||||||| ||||||||||||||  | |||    
T  7932306 tattcctttaattgtacaacttcctagattgattgtcactactcct--agtatacaacttcctaggctagtgcttactcattaagcattcaattaattta 7932403  T
Q  186 ttgtaacaccattataaatacaat-agtgtgatctcattatagacac 231  Q
    |||||| | |||||||||||||||  |||||||||||||||||||||    
T  7932404 ttgtaaaatcattataaatacaatgtgtgtgatctcattatagacac 7932450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 64 - 228
Target Start/End: Original strand, 321936 - 322102
Alignment:
Q  64 tgttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattc-acttcctaggctagtgcttac 162  Q
    ||||||| |||||| ||||||| ||||| ||||| | ||| |||||||||||||||| |||| |||||| |||||||| ||||||| || ||||||||||    
T  321936 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggttagtgcttac 322035  T
Q  163 taattaagcattcaatgcacttattgtaacaccattataaatacaa-tagtgtgatctcattataga 228  Q
    ||| ||||||||||||| | |||||||||   ||||||||||||||   ||||||||||||||||||    
T  322036 taaataagcattcaatgtatttattgtaaaggcattataaatacaaggtgtgtgatctcattataga 322102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 64 - 234
Target Start/End: Original strand, 38609281 - 38609460
Alignment:
Q  64 tgttaaagttaagagtctttaggtattct-tttaattgtaccacttcctagattgattgttattactccttgagtattc-acttcctaggctagtgctta 161  Q
    ||||||| |||||| ||||||| |||||  ||||||||||| |||||||| ||||||||||||||||||| |||||| | ||||||||||||||||| ||    
T  38609281 tgttaaaattaagaatctttagatattccctttaattgtacaacttcctaaattgattgttattactcctagagtatacaacttcctaggctagtgcgta 38609380  T
Q  162 ctaattaagcattcaatgca------cttattgtaacaccattataaatacaa-tagtgtgatctcattatagacacaca 234  Q
    || ||||||||||| || ||       ||||||||| ||||||||||||||||   ||||||||||||||||||||||||    
T  38609381 ctcattaagcattcgatacatttatttttattgtaaaaccattataaatacaaggtgtgtgatctcattatagacacaca 38609460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 63 - 201
Target Start/End: Original strand, 5578952 - 5579095
Alignment:
Q  63 ctgttaaagttaagagtctttaggtattcttttaattgtacc----acttcctagattgattgttattactccttgagtattca-cttcctaggctagtg 157  Q
    |||||||| |||||| ||||||| ||||| |||||||| ||     ||||||||||||||||||||||||| || |||||| || |||||||||||||||    
T  5578952 ctgttaaaattaagaatctttagatattcctttaattgaactgatgacttcctagattgattgttattacttctagagtatacaacttcctaggctagtg 5579051  T
Q  158 cttactaattaagcattcaatgcacttattgtaacaccattata 201  Q
    ||| || |||||||||||||||   ||||||||| |||||||||    
T  5579052 cttgctcattaagcattcaatgtgtttattgtaaaaccattata 5579095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 64 - 232
Target Start/End: Original strand, 39894794 - 39894962
Alignment:
Q  64 tgttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattca-cttcctaggctagtgcttac 162  Q
    ||||||| |||||| |||| || ||||| ||||||||||  |||||||  |||||||||||||    || |||||| || |||||||||||||||| |||    
T  39894794 tgttaaaattaagaatcttcagatattcctttaattgtataacttcctgcattgattgttatt----ctagagtatacaacttcctaggctagtgcctac 39894889  T
Q  163 taattaagcattcaatgcacttattgtaacaccattataaatacaa---tagtgtgatctcattatagacaca 232  Q
    | ||||||||||||||||| ||||||||| | | ||||||||||||     ||||||||||||||||||||||    
T  39894890 tcattaagcattcaatgcatttattgtaaaatcgttataaatacaaggtgtgtgtgatctcattatagacaca 39894962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 62 - 208
Target Start/End: Complemental strand, 3120905 - 3120758
Alignment:
Q  62 actgttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactcct-tgagtattc-acttcctaggctagtgct 159  Q
    |||||||||  ||||| | ||||| ||||| ||||||||||| |||||||||||||||||| ||||||| |  |||| ||| ||||||||  ||||||||    
T  3120905 actgttaaaagtaagaatatttagatattcctttaattgtacaacttcctagattgattgtcattactcttaagagtgttcaacttcctaatctagtgct 3120806  T
Q  160 tactaattaagcattcaatgcacttattgtaacaccattataaatacaa 208  Q
    |||||| ||||||||||||| | ||||||||| | ||||||||||||||    
T  3120805 tactaaataagcattcaatgtatttattgtaa-agcattataaatacaa 3120758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 208
Target Start/End: Original strand, 29907250 - 29907316
Alignment:
Q  142 acttcctaggctagtgcttactaattaagcattcaatgcacttattgtaacaccattataaatacaa 208  Q
    |||||| ||||||||||||||| | ||||||||||||||| ||| ||||| ||||||||||||||||    
T  29907250 acttccaaggctagtgcttacttactaagcattcaatgcatttagtgtaaaaccattataaatacaa 29907316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 314 - 372
Target Start/End: Original strand, 24234807 - 24234865
Alignment:
Q  314 ttttcatcaaaaatacccaagtacatctagaaaagtcatcaataaaagtaacaaaatat 372  Q
    ||||||| ||||||| ||| || || | |||||||||||||||||||||||||||||||    
T  24234807 ttttcattaaaaatatccatgtgcaacaagaaaagtcatcaataaaagtaacaaaatat 24234865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 6e-59; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 63 - 264
Target Start/End: Original strand, 39437172 - 39437374
Alignment:
Q  63 ctgttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattca-cttcctaggctagtgctta 161  Q
    ||||||||||||||| ||||||| ||| | ||||||||||| |||||||||||||||| |||| |||||| ||||||||| |||||||||||||||||||    
T  39437172 ctgttaaagttaagaatctttagatatccctttaattgtacaacttcctagattgatt-ttataactcctagagtattcaacttcctaggctagtgctta 39437270  T
Q  162 ctaattaagcattcaatgcacttattgtaacaccattataaatacaa-tagtgtgatctcattatagacacacagagagtttacacagacttcacatatt 260  Q
    |||| ||||||||||||| | |||||||||  |||||||||||||||   |||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  39437271 ctaaataagcattcaatgtatttattgtaaagccattataaatacaagctgtgtgatctcattatagatacacagagagtttacccagacttcacatatt 39437370  T
Q  261 ttac 264  Q
    ||||    
T  39437371 ttac 39437374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 63 - 234
Target Start/End: Original strand, 41223927 - 41224099
Alignment:
Q  63 ctgttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattca-cttcctaggctagtgctta 161  Q
    ||||||||||||||| ||||||| ||| | ||||| ||||| |||||||||||||||||||||||||||  |||||| || ||||||||||||||||| |    
T  41223927 ctgttaaagttaagaatctttagatatgcctttaactgtacaacttcctagattgattgttattactccaagagtatacaacttcctaggctagtgctca 41224026  T
Q  162 ctaattaagcattcaatgcacttattgtaacaccattataaatacaatagtgtgatctcattatagacacaca 234  Q
    |||| ||||||||||||| | ||||||||| ||||| ||||||||||  ||||||||||||||||||||||||    
T  41224027 ctaaataagcattcaatgtatttattgtaaaaccatcataaatacaagggtgtgatctcattatagacacaca 41224099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 64 - 264
Target Start/End: Original strand, 49529487 - 49529684
Alignment:
Q  64 tgttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattca-cttcctaggctagtgcttac 162  Q
    |||||||||||||| |||||||  || | ||||||||||| |||||||||||||||||| || |||||| ||||||||| ||||||||||||||||||||    
T  49529487 tgttaaagttaagaatctttag--atccctttaattgtacaacttcctagattgattgt-ataactcctagagtattcaacttcctaggctagtgcttac 49529583  T
Q  163 taattaagcattcaatgcacttattgtaacaccattataaatacaa-tagtgtgatctcattatagacacacagagagtttacacagacttcacatattt 261  Q
    ||| ||||||||||||| | |||| ||||  |||||||||||||||    ||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  49529584 taaataagcattcaatgtatttatggtaaagccattataaatacaagctttgtgatctcattatagacacac--agagtttacacagacttcacatattt 49529681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 66 - 261
Target Start/End: Complemental strand, 50848298 - 50848100
Alignment:
Q  66 ttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactcctt-gagtattca-cttcctaggctagtgcttact 163  Q
    |||||||||||| ||||||| ||||| ||||||| | | |||||||||||||||||  ||||||||   ||||||||| |||||||||||||||||||||    
T  50848298 ttaaagttaagaatctttagatattcgtttaattattctacttcctagattgattgcgattactcccaagagtattcaacttcctaggctagtgcttact 50848199  T
Q  164 aattaagcattcaatgcacttattgtaacaccattataaatacaa-tagtgtgatctcattatagacacacagagagtttacacagacttcacatattt 261  Q
    |||||||||||||||| | || ||||||  |||||||| ||||||   | |||||||||||||||||||||| |||||||| |||||||||||||||||    
T  50848198 aattaagcattcaatgtattttttgtaaagccattatagatacaaggtgagtgatctcattatagacacacacagagtttagacagacttcacatattt 50848100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 72 - 232
Target Start/End: Complemental strand, 44898064 - 44897902
Alignment:
Q  72 ttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattcac-ttcctaggctagtgcttactaattaag 170  Q
    |||||| ||||||  ||||| ||||||||||| |||||| ||||||||||||||||||||  |||||| | | ||||||||||||| |||||| ||||||    
T  44898064 ttaagaatctttacatattcctttaattgtacaacttcccagattgattgttattactccaagagtatactccttcctaggctagttcttactcattaag 44897965  T
Q  171 cattcaatgcacttattgtaacaccattataaatacaa-tagtgtgatctcattatagacaca 232  Q
    ||||||||||||||||||||| ||||||||||||||||   ||||||||||||||||||||||    
T  44897964 cattcaatgcacttattgtaaaaccattataaatacaaggtgtgtgatctcattatagacaca 44897902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 63 - 236
Target Start/End: Complemental strand, 47442198 - 47442023
Alignment:
Q  63 ctgttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattca-cttcctaggctagtgctta 161  Q
    |||||||| |||||| |||||||| |||| ||| ||| ||  ||||||||| ||||| |||||||||||| |||||| || ||| |||| ||||||||||    
T  47442198 ctgttaaaattaagaatctttaggaattcctttcattctataacttcctagtttgatagttattactcctagagtatacaacttgctagtctagtgctta 47442099  T
Q  162 ctaattaagcattcaatgcacttattgtaacaccattataaatac-aatagtgtgatctcattatagacacacaga 236  Q
    |||||||||||||||||||| ||||||||| |||||| ||||||| || ||||||||||| |||||||||||||||    
T  47442098 ctaattaagcattcaatgcatttattgtaaaaccattgtaaatacaaagagtgtgatctcgttatagacacacaga 47442023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 64 - 243
Target Start/End: Original strand, 37078261 - 37078441
Alignment:
Q  64 tgttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattc-acttcctaggctagtgcttac 162  Q
    |||||||||||||| ||||||| ||| | ||||| ||||| ||||||||||||||||| ||| |||||| |||||||| |||| |||||||| || ||||    
T  37078261 tgttaaagttaagaatctttagatatccctttaactgtacaacttcctagattgattg-tataactcctagagtattcaactttctaggctactgtttac 37078359  T
Q  163 taattaagcattcaatgcacttattgtaacaccattataaatacaa-tagtgtgatctcattatagacacacagagagttta 243  Q
    ||| ||||||||||||| | |||||||||  |||||||||||||||   |||||||||||||||||||||||||||| ||||    
T  37078360 taaataagcattcaatgtatttattgtaaagccattataaatacaagctgtgtgatctcattatagacacacagagaattta 37078441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 64 - 232
Target Start/End: Original strand, 37078990 - 37079159
Alignment:
Q  64 tgttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattca-cttcctaggctagtgcttac 162  Q
    |||||||||||||| ||||||| ||| | ||||| ||||| |||||||||||||||||| || |||||| ||||||||| |||||||||||| |||||||    
T  37078990 tgttaaagttaagaatctttagatatccctttaactgtacaacttcctagattgattgt-ataactcctagagtattcaacttcctaggctactgcttac 37079088  T
Q  163 taattaagcattcaatgcacttattgtaacaccattataaatacaa-tagtgtgatctcattatagacaca 232  Q
    ||| ||||||||||||| | |||||||||  |||||||||||||||   |||||||||||||||| |||||    
T  37079089 taaataagcattcaatgtatttattgtaaagccattataaatacaagctgtgtgatctcattatacacaca 37079159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 149 - 264
Target Start/End: Complemental strand, 32476686 - 32476571
Alignment:
Q  149 aggctagtgcttactaattaagcattcaatgcacttattgtaacaccattataaatacaatagtgtgatctcattatagacacacagagagtttacacag 248  Q
    ||||||||||| ||||| || |||||||||||| |||||||||  ||| |||||||| ||  |||||||||||||||||| ||||| |||||||||||||    
T  32476686 aggctagtgctcactaaatatgcattcaatgcatttattgtaaacccactataaatagaagggtgtgatctcattatagagacacacagagtttacacag 32476587  T
Q  249 acttcacatattttac 264  Q
    ||||||||||||||||    
T  32476586 acttcacatattttac 32476571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 64 - 224
Target Start/End: Complemental strand, 28502004 - 28501848
Alignment:
Q  64 tgttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattc-acttcctaggctagtgcttac 162  Q
    |||||||||||||| ||||||| ||||| ||||||||||| |||||||||||||||||| |||||||||    ||||| ||||||||||||||||   |     
T  28502004 tgttaaagttaagaatctttagatattcctttaattgtacaacttcctagattgattgtaattactcct---atattcaacttcctaggctagtg---at 28501911  T
Q  163 taattaagcattcaatgcacttattgtaacaccattataaatacaa-tagtgtgatctcatta 224  Q
    ||||| |||||| |||||| ||||||||| ||||||||| ||||||   ||||||||||||||    
T  28501910 taatttagcatttaatgcatttattgtaaaaccattatatatacaaggtgtgtgatctcatta 28501848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 114 - 229
Target Start/End: Complemental strand, 6848741 - 6848624
Alignment:
Q  114 attgattgttattactccttgagtattca-cttcctaggctagtgcttactaattaagcattcaatgcacttattgtaacaccattataaatacaa-tag 211  Q
    ||||||||||||||||||| |||||| || ||||||||||||||||||||| |||||||||||| |||| ||||||||| |||||||  |||||||   |    
T  6848741 attgattgttattactcctagagtatacaacttcctaggctagtgcttactcattaagcattcattgcatttattgtaaaaccattaataatacaaggtg 6848642  T
Q  212 tgtgatctcattatagac 229  Q
    ||||||||||||||||||    
T  6848641 tgtgatctcattatagac 6848624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 98 - 233
Target Start/End: Original strand, 22384006 - 22384143
Alignment:
Q  98 ttgtaccacttcctagattgattgttattactccttgagtattcactt-cctaggctagtgcttactaattaagcattcaatgcacttattgtaacacca 196  Q
    |||||| ||||| ||||||||||||||||| ||||  ||||| || || |||| ||| ||||||| ||||||||||||||||| | ||||| ||  ||||    
T  22384006 ttgtacaacttcttagattgattgttattattcctatagtatacaatttcctaagcttgtgcttattaattaagcattcaatgtatttattctacaacca 22384105  T
Q  197 ttataaatacaa-tagtgtgatctcattatagacacac 233  Q
    ||||||||||||   ||||| |||||| ||||||||||    
T  22384106 ttataaatacaaggtgtgtggtctcatcatagacacac 22384143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 139
Target Start/End: Original strand, 16184702 - 16184780
Alignment:
Q  61 tactgttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtat 139  Q
    ||||||||||  ||||| ||||||| ||||||||||||||||| ||||||| || |||||||||||| |||| ||||||    
T  16184702 tactgttaaaagtaagaatctttagatattcttttaattgtacaacttcctcgactgattgttattattcctagagtat 16184780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 143 - 208
Target Start/End: Original strand, 16184959 - 16185024
Alignment:
Q  143 cttcctaggctagtgcttactaattaagcattcaatgcacttattgtaacaccattataaatacaa 208  Q
    ||||||||||||||||||||| ||||||||||||| ||| ||||||||| || || ||||||||||    
T  16184959 cttcctaggctagtgcttactcattaagcattcaacgcatttattgtaaaactatcataaatacaa 16185024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 315 - 372
Target Start/End: Complemental strand, 20704876 - 20704819
Alignment:
Q  315 tttcatcaaaaatacccaagtacatctagaaaagtcatcaataaaagtaacaaaatat 372  Q
    |||||| || || |||||||||||||||||||| ||||||||||| ||||||||||||    
T  20704876 tttcattaagaaaacccaagtacatctagaaaattcatcaataaaggtaacaaaatat 20704819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 13188117 - 13188184
Alignment:
Q  142 acttcctaggctagtgcttactaattaagcattcaatgcacttattgtaacaccattataaatacaat 209  Q
    |||||||||||||||||||||| ||||| ||||||||| | ||||| ||| || | ||||||||||||    
T  13188117 acttcctaggctagtgcttactcattaaccattcaatgaaattattataaaactactataaatacaat 13188184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 50853897 - 50853964
Alignment:
Q  64 tgttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactcc 131  Q
    ||||||| |||||| |||| || ||||| ||||||||||| || | ||||||||||||||||||||||    
T  50853897 tgttaaaattaagattcttaagatattcctttaattgtacaacattctagattgattgttattactcc 50853964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 337 - 372
Target Start/End: Complemental strand, 13039222 - 13039187
Alignment:
Q  337 catctagaaaagtcatcaataaaagtaacaaaatat 372  Q
    ||||||||||| ||||||||||||||||||||||||    
T  13039222 catctagaaaactcatcaataaaagtaacaaaatat 13039187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 360
Target Start/End: Complemental strand, 14796730 - 14796667
Alignment:
Q  297 gaaaacttctgaacgacttttcatcaaaaatacccaagtacatctagaaaagtcatcaataaaa 360  Q
    |||||||||||||||| ||||||| || | || |||||||||||  ||||| ||||||||||||    
T  14796730 gaaaacttctgaacgatttttcattaacagtaaccaagtacatcgtgaaaaatcatcaataaaa 14796667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 208
Target Start/End: Original strand, 34611947 - 34612010
Alignment:
Q  145 tcctaggctagtgcttactaattaagcattcaatgcacttattgtaacaccattataaatacaa 208  Q
    ||||||| |||||||||   |||||||||||| || | |||||||||||| |||||||||||||    
T  34611947 tcctaggttagtgcttatccattaagcattcagtgtatttattgtaacactattataaatacaa 34612010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 208
Target Start/End: Original strand, 47366230 - 47366296
Alignment:
Q  142 acttcctaggctagtgcttactaattaagcattcaatgcacttattgtaacaccattataaatacaa 208  Q
    |||||||| | ||||||||| | ||||| ||||||||| | ||||||||| || |||||||||||||    
T  47366230 acttcctatgttagtgcttattgattaaccattcaatgtatttattgtaagactattataaatacaa 47366296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 9e-52; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 108 - 277
Target Start/End: Original strand, 4445511 - 4445681
Alignment:
Q  108 tcctagattgattgttattactccttgagtattca-cttcctaggctagtgcttactaattaagcattcaatgcacttattgtaacaccattataaatac 206  Q
    ||||||||||||||| || |||||| ||||||||| ||||||||||||||||||||||| |||||||| |||| | |||||||||  |||||||||||||    
T  4445511 tcctagattgattgt-ataactcctagagtattcaacttcctaggctagtgcttactaaataagcatttaatgtatttattgtaaagccattataaatac 4445609  T
Q  207 aata-gtgtgatctcattatagacacacagagagtttacacagacttcacatattttacttggtatcagagc 277  Q
    ||   |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4445610 aagctgtgtgatctcattatagacacacagagagtttacacagacttcacatattttacatggtatcagagc 4445681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 64 - 264
Target Start/End: Original strand, 4446382 - 4446584
Alignment:
Q  64 tgttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattca-cttcctaggctagtgcttac 162  Q
    |||||||||||||| | ||||| ||| | ||||||||||| |||||||||||||||||| || |||||| ||||||||| ||||||||||||||||||||    
T  4446382 tgttaaagttaagaatatttagatatccctttaattgtacaacttcctagattgattgt-ataactcctagagtattcaacttcctaggctagtgcttac 4446480  T
Q  163 taattaagc-attcaatgcacttattgtaacaccattataaatacaata-gtgtgatctcattatagacacacagagagtttacacagacttcacatatt 260  Q
    ||| ||||| |||||||| | |||||||||  |||||||||||| ||   |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4446481 taaataagccattcaatgtatttattgtaaagccattataaatagaagctgtgtgatctcattatagacacacagagagtttacacagacttaacatatt 4446580  T
Q  261 ttac 264  Q
    ||||    
T  4446581 ttac 4446584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 273 - 368
Target Start/End: Original strand, 22162886 - 22162981
Alignment:
Q  273 agagcaaaacgttttaaatattgagaaaacttctgaacgacttttcatcaaaaatacccaagtacatctagaaaagtcatcaataaaagtaacaaa 368  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22162886 agagcaaaaagttttaaatattgagaaaacttctgaacgacttttcatcaaaaatacccaagtacatctagaaaagtcatcaataaaagtaacaaa 22162981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 60 - 205
Target Start/End: Complemental strand, 27828505 - 27828359
Alignment:
Q  60 gtactgttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattca-cttcctaggctagtgc 158  Q
    ||||||||||| ||| || ||||||| |||||  |||||||||| |||||||||||||||||||||||||||| || ||| || ||||||||||||||||    
T  27828505 gtactgttaaaattatgaatctttagatattcccttaattgtacaacttcctagattgattgttattactcctagaatatacaacttcctaggctagtgc 27828406  T
Q  159 ttactaattaagcattcaatgcacttattgtaacaccattataaata 205  Q
    || || ||||||||||||||||| ||||||||| |||||||||||||    
T  27828405 tttcttattaagcattcaatgcatttattgtaaaaccattataaata 27828359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 79 - 208
Target Start/End: Original strand, 7518870 - 7519000
Alignment:
Q  79 tctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattca-cttcctaggctagtgcttactaattaagcattcaa 177  Q
    ||||||| ||||| ||||| ||||| |||||||||||||| ||||||||||||| |||||| || ||||||||||||||||||||| ||||||| |||||    
T  7518870 tctttagatattcctttaactgtacaacttcctagattgactgttattactcctagagtatacaacttcctaggctagtgcttacttattaagctttcaa 7518969  T
Q  178 tgcacttattgtaacaccattataaatacaa 208  Q
    |||  ||||||||| ||| ||||||||||||    
T  7518970 tgcttttattgtaaaaccgttataaatacaa 7519000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 64 - 232
Target Start/End: Complemental strand, 43432264 - 43432094
Alignment:
Q  64 tgttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattca-cttcctaggctagtgcttac 162  Q
    ||||||| |||||| |||| |  ||||| ||||||||||| ||||| ||||||||||||||||| ||||  ||||| || ||||||||||||||||||||    
T  43432264 tgttaaaattaagaatcttcatatattcctttaattgtacaacttcgtagattgattgttattattcctaaagtatgcaacttcctaggctagtgcttac 43432165  T
Q  163 taattaagcattcaatgcacttattgtaacaccattataaatacaa-tagtgtgatctcattatagacaca 232  Q
    | ||||||||||||||| | ||||||||| ||  ||||  ||||||   ||||||||||||||||||||||    
T  43432164 tgattaagcattcaatgaatttattgtaaaacagttatgcatacaaggtgtgtgatctcattatagacaca 43432094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 94 - 224
Target Start/End: Complemental strand, 27827663 - 27827527
Alignment:
Q  94 ttaattgtaccacttcctagattgattgttattactccttgagtattca-cttcctaggctagtgcttactaattaagca----ttcaatgcacttattg 188  Q
    |||||||||| ||||||||||||| ||||||| |||||| |||||| || ||||||||||||||||||||| ||||||||    ||||||    ||||||    
T  27827663 ttaattgtacaacttcctagattggttgttataactcctagagtatacaacttcctaggctagtgcttacttattaagcaagcattcaatttgtttattg 27827564  T
Q  189 taacaccattataaatacaa-tagtgtgatctcatta 224  Q
    ||| ||||||||||||||||   ||||||||||||||    
T  27827563 taaaaccattataaatacaaggtgtgtgatctcatta 27827527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 22160336 - 22160285
Alignment:
Q  183 ttattgtaacaccattataaatacaatagtgtgatctcattatagacacaca 234  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  22160336 ttattgtaacactagtataaatacaatagtgtgatctcattatagacacaca 22160285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 22164787 - 22164736
Alignment:
Q  183 ttattgtaacaccattataaatacaatagtgtgatctcattatagacacaca 234  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  22164787 ttattgtaacactagtataaatacaatagtgtgatctcattatagacacaca 22164736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 27827504 - 27827436
Alignment:
Q  105 acttcctagattgattgttattactccttgagtattca-cttcctaggctagtgcttactaattaagca 172  Q
    ||||||||||||||||||| |||| ||| |||||| || ||||||||||||||||||||| ||||||||    
T  27827504 acttcctagattgattgttcttacacctagagtatacaacttcctaggctagtgcttacttattaagca 27827436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 234
Target Start/End: Original strand, 39387622 - 39387669
Alignment:
Q  187 tgtaacaccattataaatacaatagtgtgatctcattatagacacaca 234  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||    
T  39387622 tgtaacactagtataaatacaatagtgtgatctcattatagacacaca 39387669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 62 - 132
Target Start/End: Complemental strand, 23498466 - 23498396
Alignment:
Q  62 actgttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactcct 132  Q
    |||||| || |||||| ||||||| | ||| ||||||||||| ||||||||||||||||| ||||||||||    
T  23498466 actgttgaaattaagaatctttagattttcctttaattgtactacttcctagattgattgctattactcct 23498396  T

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Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 66 - 236
Target Start/End: Complemental strand, 15869526 - 15869354
Alignment:
Q  66 ttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattca-cttcctaggctagtgcttacta 164  Q
    ||||| |||||| ||||||| ||||| ||| || |||| ||| |||||||||||||||||||||||| |||||| || |||| ||||||||||||||||     
T  15869526 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttactc 15869427  T
Q  165 attaagcattcaatgcacttattgtaacaccattataaatacaa-tagtgtgatctcattatagacacacaga 236  Q
    ||||||||||||||| | ||||||||| ||||||||||||||||   ||||| ||||||||||||||||||||    
T  15869426 attaagcattcaatgtatttattgtaaaaccattataaatacaaggcgtgtgttctcattatagacacacaga 15869354  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 20591953 - 20591902
Alignment:
Q  183 ttattgtaacaccattataaatacaatagtgtgatctcattatagacacaca 234  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  20591953 ttattgtaacactagtataaatacaatagtgtgatctcattatagacacaca 20591902  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 20595580 - 20595522
Alignment:
Q  172 attcaatgcacttattgtaacaccattataaatacaatagtgtgatctcattatagacaca 232  Q
    |||||||| | ||||||||||||   |||||||||||||||||||||||||||||||||||    
T  20595580 attcaatgtatttattgtaacacg--tataaatacaatagtgtgatctcattatagacaca 20595522  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 297 - 368
Target Start/End: Complemental strand, 12895613 - 12895542
Alignment:
Q  297 gaaaacttctgaacgacttttcatcaaaaatacccaagtacatctagaaaagtcatcaataaaagtaacaaa 368  Q
    |||||||||||||| | ||||||| || ||||||||||||||||  ||||| ||||||||||| || |||||    
T  12895613 gaaaacttctgaacaatttttcattaagaatacccaagtacatcgtgaaaaatcatcaataaacgttacaaa 12895542  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 34032727 - 34032662
Alignment:
Q  142 acttcctaggctagtgcttactaattaagcattcaatgcacttattgtaacaccattataaataca 207  Q
    |||||||||| ||||||| ||| |||||| ||| |||| | |||||||||||| ||| ||||||||    
T  34032727 acttcctaggttagtgctcactcattaagaattaaatgtatttattgtaacacaattttaaataca 34032662  T

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Target: chr3 (Bit Score: 79; Significance: 7e-37; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 64 - 236
Target Start/End: Complemental strand, 20270037 - 20269863
Alignment:
Q  64 tgttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattc-acttcctaggctagtgcttac 162  Q
    ||||||| |||||| ||||||| ||||| ||||||||||| | ||||||||||||||||||||||||||  | ||| | |||||||||| ||||||||||    
T  20270037 tgttaaaattaagaatctttagatattcctttaattgtacaatttcctagattgattgttattactcctacactatacaacttcctaggttagtgcttac 20269938  T
Q  163 taattaagcattcaatgcacttattgtaacaccattataaatacaa-tagtgtgatctcattatagacacacaga 236  Q
    |||||||| |||||||| | ||||||||| | ||||||| ||||||   ||||||||||||||||||| ||||||    
T  20269937 taattaagtattcaatgtatttattgtaaaatcattatagatacaaggtgtgtgatctcattatagactcacaga 20269863  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 64 - 234
Target Start/End: Complemental strand, 48596952 - 48596778
Alignment:
Q  64 tgttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtat-tcacttcctaggctag---tgct 159  Q
    ||||||| |||||| | ||||| ||||| ||||||| ||  |||||||||||||||||||||||||||| ||||||   ||||||| || |||   ||||    
T  48596952 tgttaaaattaagaatttttagatattcctttaattttataacttcctagattgattgttattactcctagagtataaaacttccttggttagtgctgct 48596853  T
Q  160 tactaattaagcattcaatgcacttattgtaacaccattataaatacaatagtgtgatctcattatagacacaca 234  Q
     | ||| ||||||||||| | | ||||||||  ||||||||||||| ||  ||||||||||||||||||||||||    
T  48596852 caataaataagcattcaaagtatttattgtataaccattataaatagaagggtgtgatctcattatagacacaca 48596778  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 28767524 - 28767459
Alignment:
Q  142 acttcctaggctagtgcttactaattaagcattcaatgcacttattgtaacaccattataaataca 207  Q
    |||||||||||||||||||||| |||||||||||||| || ||||||||| |||||||||||||||    
T  28767524 acttcctaggctagtgcttactcattaagcattcaatacatttattgtaaaaccattataaataca 28767459  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 171
Target Start/End: Original strand, 26218774 - 26218874
Alignment:
Q  72 ttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattc-acttcctaggctagtgcttactaattaag 170  Q
    |||||| ||||||| ||||| ||||||||||  ||||| ||||||||||||||||| |||| || ||| | || ||||||| ||||||||||||||||||    
T  26218774 ttaagaatctttagatattcctttaattgtataacttcatagattgattgttattattcctagaatatacaacatcctaggttagtgcttactaattaag 26218873  T
Q  171 c 171  Q
    |    
T  26218874 c 26218874  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 69 - 234
Target Start/End: Complemental strand, 109714 - 109547
Alignment:
Q  69 aagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattc-acttcctaggctagtgcttactaatt 167  Q
    ||||||| | ||||||| ||||  ||||||||||| |||| |||||||||||||||||||| || | |||| | |||| ||| ||||||||||| |  ||    
T  109714 aagttaaaaatctttagatattactttaattgtacaactttctagattgattgttattacttctcgcgtatacaactttctaagctagtgcttattcctt 109615  T
Q  168 aagcattcaatgcacttattgtaacaccattataaatacaa-tagtgtgatctcattatagacacaca 234  Q
    || |||| ||| || |||  |||| ||||||||||||||||   ||||||| ||||||| ||||||||    
T  109614 aaacatttaatacatttacagtaataccattataaatacaaggggtgtgatttcattatcgacacaca 109547  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 107 - 208
Target Start/End: Original strand, 40268360 - 40268462
Alignment:
Q  107 ttcctagattgattgttattactccttgagtat-tcacttcctaggctagtgcttactaattaagcattcaatgcacttattgtaacaccattataaata 205  Q
    |||||||||||||||||| || |||| |||||| | ||||| |||| ||||||||| | ||||| ||||||||  | |||||||||| | ||||||||||    
T  40268360 ttcctagattgattgttaatattcctagagtatataacttcataggttagtgcttattcattaaccattcaatctatttattgtaacgctattataaata 40268459  T
Q  206 caa 208  Q
    |||    
T  40268460 caa 40268462  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 191
Target Start/End: Original strand, 55242349 - 55242454
Alignment:
Q  87 tattcttttaattgtaccacttcctagattgattgttattactccttgagtattc-acttcctaggctagtgcttactaattaagcattcaatgcactta 185  Q
    ||||| ||||| ||||| |||||||||||||||||||| ||  ||| |||||| | |||||||||| ||||||||| | ||||||| || |||| | |||    
T  55242349 tattcctttaaatgtacaacttcctagattgattgttaatatccctagagtatacaacttcctaggttagtgcttattcattaagctttaaatgtattta 55242448  T
Q  186 ttgtaa 191  Q
    ||||||    
T  55242449 ttgtaa 55242454  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 128
Target Start/End: Complemental strand, 28767710 - 28767648
Alignment:
Q  66 ttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattac 128  Q
    ||||| |||| | ||||||  ||||| ||||||||||| ||||||||||||||||||||||||    
T  28767710 ttaaaattaaaaatctttaaatattcatttaattgtacaacttcctagattgattgttattac 28767648  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 314 - 372
Target Start/End: Complemental strand, 55253867 - 55253809
Alignment:
Q  314 ttttcatcaaaaatacccaagtacatctagaaaagtcatcaataaaagtaacaaaatat 372  Q
    ||||||| ||||||| ||| || |||| ||||||||||||||||||||| |||||||||    
T  55253867 ttttcattaaaaataaccatgtgcatcgagaaaagtcatcaataaaagtgacaaaatat 55253809  T

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Target: scaffold0175 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 315 - 371
Target Start/End: Complemental strand, 32128 - 32072
Alignment:
Q  315 tttcatcaaaaatacccaagtacatctagaaaagtcatcaataaaagtaacaaaata 371  Q
    |||||| |||||||||||||||||||| || || |||||||||||||||||| ||||    
T  32128 tttcattaaaaatacccaagtacatcttgagaaatcatcaataaaagtaacataata 32072  T

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Target: scaffold0005 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 360
Target Start/End: Original strand, 43001 - 43064
Alignment:
Q  297 gaaaacttctgaacgacttttcatcaaaaatacccaagtacatctagaaaagtcatcaataaaa 360  Q
    |||||||||||||||| ||||||| || | || |||||||||||  ||||| ||||||||||||    
T  43001 gaaaacttctgaacgatttttcattaacagtaaccaagtacatcgtgaaaaatcatcaataaaa 43064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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