View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18148_low_7 (Length: 328)
Name: NF18148_low_7
Description: NF18148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18148_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 23 - 280
Target Start/End: Complemental strand, 50276571 - 50276314
Alignment:
| Q |
23 |
tgctcaaatagaacatgagcttcaacaagtacgtcaacaggtccaacaacttaaaaagatttttcatttggtaaaattggtttgttcaatataattttat |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50276571 |
tgctcaaatagaacatgagcttcaacaagtacgtcaacaggtccaacaacttaaaaagatttttcatttggtaaaattggtttgttcaatataattttat |
50276472 |
T |
|
| Q |
123 |
tgtcattctacttattttttccatggattgcttttcccctctagggtacatttgttggaactggagttacagcggatcatggtcattcaattgttggaaa |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
50276471 |
tgtcattctacttattttttccatggattgcttttcccctctagggtacatttgttgcacctggagttacagcggatcatggtcattcaattgttggaaa |
50276372 |
T |
|
| Q |
223 |
cagtaatgcaggtgaagtgatgcaaccttgagattcatttccatcatagtggtagaaa |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
50276371 |
cagtaatgcaggtgaagtgatgcaaccttgagattcatttccttcatagtggtagaaa |
50276314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 23 - 280
Target Start/End: Complemental strand, 50280595 - 50280338
Alignment:
| Q |
23 |
tgctcaaatagaacatgagcttcaacaagtacgtcaacaggtccaacaacttaaaaagatttttcatttggtaaaattggtttgttcaatataattttat |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50280595 |
tgctcaaatagaacatgagcttcaacaagtacgtcaacaggtccaacaacttaaaaagatttttcatttggtaaaattggtttgttcaatataattttat |
50280496 |
T |
|
| Q |
123 |
tgtcattctacttattttttccatggattgcttttcccctctagggtacatttgttggaactggagttacagcggatcatggtcattcaattgttggaaa |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
50280495 |
tgtcattctacttattttttccatggattgcttttcccctctagggtacatttgttgcacctggagttacagcggatcatggtcattcaattgttggaaa |
50280396 |
T |
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| Q |
223 |
cagtaatgcaggtgaagtgatgcaaccttgagattcatttccatcatagtggtagaaa |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
50280395 |
cagtaatgcaggtgaagtgatgcaaccttgagattcatttccttcatagtggtagaaa |
50280338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 23 - 280
Target Start/End: Complemental strand, 50288239 - 50287982
Alignment:
| Q |
23 |
tgctcaaatagaacatgagcttcaacaagtacgtcaacaggtccaacaacttaaaaagatttttcatttggtaaaattggtttgttcaatataattttat |
122 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50288239 |
tgctcaaatagaacatgagcttcaacaagtacgtcaacaggtccaacaacttaaaaagatttttcatttggtaaaattggtttgttcaatataattttat |
50288140 |
T |
|
| Q |
123 |
tgtcattctacttattttttccatggattgcttttcccctctagggtacatttgttggaactggagttacagcggatcatggtcattcaattgttggaaa |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
50288139 |
tgtcattctacttattttttccatggattgcttttcccctctagggtacatttgttgcacctggagttacagcggatcatggtcattcaattgttggaaa |
50288040 |
T |
|
| Q |
223 |
cagtaatgcaggtgaagtgatgcaaccttgagattcatttccatcatagtggtagaaa |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
50288039 |
cagtaatgcaggtgaagtgatgcaaccttgagattcattttcttcatagtggtagaaa |
50287982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 275 - 319
Target Start/End: Complemental strand, 50276281 - 50276237
Alignment:
| Q |
275 |
tagaaactacattacttttgttattttaactgcaattgatgatgt |
319 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
50276281 |
tagaaactacattacttttgttattttaactgcaatttatgatgt |
50276237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 275 - 319
Target Start/End: Complemental strand, 50280305 - 50280261
Alignment:
| Q |
275 |
tagaaactacattacttttgttattttaactgcaattgatgatgt |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
50280305 |
tagaaactacattacttttgttattttaactgcaatttatgatgt |
50280261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 275 - 319
Target Start/End: Complemental strand, 50287949 - 50287905
Alignment:
| Q |
275 |
tagaaactacattacttttgttattttaactgcaattgatgatgt |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
50287949 |
tagaaactacattacttttgttattttaactgcaatttatgatgt |
50287905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 23 - 280
Target Start/End: Original strand, 14461910 - 14462166
Alignment:
| Q |
23 |
tgctcaaatagaacatgagcttcaacaagtacgtcaacaggtccaacaacttaaaaagatttttcatttggtaaaattggtttgttcaatataattttat |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
14461910 |
tgctcaaatagaacatgagcttcaacaagtacgtcaacaggtccaacaacttaaaaagatttttcatttgataaaattggtttgttaaatataattttat |
14462009 |
T |
|
| Q |
123 |
tgtcattctacttattttttccatggattgcttttcccctctagggtacatttgttggaactggagttacagcggatcatggtcattcaattgttggaaa |
222 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
14462010 |
tgtcattctacttattttttccatggattgcttttcccctctagggtacatttgttggaattggagttacagcggatcatggtcattcaattgttggaaa |
14462109 |
T |
|
| Q |
223 |
cagtaatgcaggtgaagtgatgcaaccttgagattcatttccatcatagtggtagaaa |
280 |
Q |
| |
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| ||||||||||||| |||||||||||||||||||||||| | ||||||||||||||| |
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| T |
14462110 |
c-gtaatgcaggtgaggtgatgcaaccttgagattcattttcttcatagtggtagaaa |
14462166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 275 - 319
Target Start/End: Original strand, 14462199 - 14462243
Alignment:
| Q |
275 |
tagaaactacattacttttgttattttaactgcaattgatgatgt |
319 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
14462199 |
tagaaactacattacttttgttattttaactgcaatttatgatgt |
14462243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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