View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18148_low_9 (Length: 321)
Name: NF18148_low_9
Description: NF18148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18148_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 35905321 - 35905010
Alignment:
| Q |
1 |
aatgaaaattatattcataacgagagaatatgaaacgtcaattacgctaaaagagtatataagatttatatagccaatgagaataacaactaactagtgt |
100 |
Q |
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| T |
35905321 |
aatgaaaattatattgataacgagagaatatgaaacgtgaattacgctaaaagagtatataagatttatatagccaatgagaataacaactaactagtgt |
35905222 |
T |
|
| Q |
101 |
aattaactaattttatatctgataccaggttcatacacaaacaccacatcaagttggttgcctctctatggaaattctcacacaaccggaacgaaatcaa |
200 |
Q |
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| T |
35905221 |
aattaactaattttatatctgataccaggttcatacacaaacaccacatcaagttggttgcctctctatggaaattctcacacaaccggaacgaaatcaa |
35905122 |
T |
|
| Q |
201 |
caggatcagggaagagtactatgggcagtggtgcaaatttagccatggctcaaggactgtgtcgatatttctctttacaagagatgaagcaagcaaccaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35905121 |
caggatcagggaagagtactatgggcagtggtgcaaatttagccatggctcaaggactgtgtcgatatttctctttacaagagatgaagcaagcaaccaa |
35905022 |
T |
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| Q |
301 |
gaattttgatga |
312 |
Q |
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|||||||||||| |
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| T |
35905021 |
gaattttgatga |
35905010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 312
Target Start/End: Original strand, 47624163 - 47624233
Alignment:
| Q |
242 |
gccatggctcaaggactgtgtcgatatttctctttacaagagatgaagcaagcaaccaagaattttgatga |
312 |
Q |
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| T |
47624163 |
gccatgacccaaggtctatgtcgctatttttcgttacaagagataaagcaagcaaccaacagttttgatga |
47624233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 110
Target Start/End: Original strand, 13868806 - 13868847
Alignment:
| Q |
69 |
tatagccaatgagaataacaactaactagtgtaattaactaa |
110 |
Q |
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| T |
13868806 |
tatagccaatgagaataacgactaactaatgtaactaactaa |
13868847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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