View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18149_high_10 (Length: 303)

Name: NF18149_high_10
Description: NF18149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18149_high_10
NF18149_high_10
[»] scaffold0164 (2 HSPs)
scaffold0164 (20-261)||(12063-12305)
scaffold0164 (245-288)||(2003-2046)
[»] chr6 (3 HSPs)
chr6 (9-129)||(18700005-18700125)
chr6 (79-176)||(8891056-8891153)
chr6 (186-285)||(18699881-18699980)
[»] chr5 (1 HSPs)
chr5 (77-176)||(40883368-40883467)
[»] chr4 (1 HSPs)
chr4 (58-126)||(51035187-51035255)
[»] chr7 (1 HSPs)
chr7 (63-133)||(10208622-10208692)
[»] chr3 (1 HSPs)
chr3 (8-173)||(48118104-48118275)
[»] chr1 (1 HSPs)
chr1 (77-133)||(33358293-33358349)


Alignment Details
Target: scaffold0164 (Bit Score: 146; Significance: 6e-77; HSPs: 2)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 12305 - 12063
Alignment:
Q  20 ttcactaatgttcccatgactcaatttctcaataaattcaaagagagtgcatgtaggatgtacgtgtttctaattccactctttatgatcatcatttg-t 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |    
T  12305 ttcactaatgttcccatgactcaatttctcaataaattcaaagagagtgcatgtaggatgtaagtgtttctaattccactctttatgatcatcatttgtt 12206  T
Q  119 ttcatttttctttttgagtgaataataatttctttcatgtttctcacaatattccatg-nnnnnnnnncttctcaactgtctttgttgttgttctatcnn 217  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||          |||| |||||||||||||||||||||||||      
T  12205 ttcatttttcattttgagtgaataataatttctttcatgtttttcacaatattccatgatttttttttcttcccaactgtctttgttgttgttctatctt 12106  T
Q  218 nnnnnnnctgtaacactttattgtttttctctaaagctatggtt 261  Q
            ||| ||||||||||||||||||||||||||||||||    
T  12105 ttttttt-tgttacactttattgtttttctctaaagctatggtt 12063  T

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Target: scaffold0164; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 288
Target Start/End: Complemental strand, 2046 - 2003
Alignment:
Q  245 tctctaaagctatggttatgggtgcagagagtcaacaaagaaat 288  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  2046 tctctaaagctatggttatggctgcagagagtcaacaaagaaat 2003  T

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Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 9 - 129
Target Start/End: Complemental strand, 18700125 - 18700005
Alignment:
Q  9 agcagagacggttcactaatgttcccatgactcaatttctcaataaattcaaagagagtgcatgtaggatgtacgtgtttctaattccactctttatgat 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18700125 agcaaagacggttcactaatgttcccatgactcaatttctcaataaattcaaagagagtgcatgtaggatgtacgtgtttctaattccactctttatgat 18700026  T
Q  109 catcatttgtttcatttttct 129  Q
    |||||||||||||||||||||    
T  18700025 catcatttgtttcatttttct 18700005  T

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Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 79 - 176
Target Start/End: Original strand, 8891056 - 8891153
Alignment:
Q  79 gtacgtgtttctaattccactctttatgatcatcatttgtttcatttttctttttgagtgaataataatttctttcatgtttctcacaatattccatg 176  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||| |  ||||||||||||||||||||||| |||||||    
T  8891056 gtacgtgtttctaattccactctttatgatcatcatttgtttaatttttatttttgagggaatcaccatttctttcatgtttctcacaatgttccatg 8891153  T

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Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 186 - 285
Target Start/End: Complemental strand, 18699980 - 18699881
Alignment:
Q  186 cttctcaactgtctttgttgttgttctatcnnnnnnnnnctgtaacactttattgtttttctctaaagctatggttatgggtgcagagagtcaacaaaga 285  Q
    |||||||||| |||||||||||||||||||          ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18699980 cttctcaactatctttgttgttgttctatctttttttttttgttacactttattgtttttctctaaagctatggttatgggtgcagagagtcaacaaaga 18699881  T

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Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 77 - 176
Target Start/End: Complemental strand, 40883467 - 40883368
Alignment:
Q  77 atgtacgtgtttctaattccactctttatgatcatcatttgtttcatttttctttttgagtgaataataatttctttcatgtttctcacaatattccatg 176  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||  |||| |  ||||||||||||||||||||||| |||||||    
T  40883467 atgtacgtgtttctaattccactctttatgatcatcatttgtttaatttttatttttgatggaatcaccatttctttcatgtttctcacaatgttccatg 40883368  T

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Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 58 - 126
Target Start/End: Complemental strand, 51035255 - 51035187
Alignment:
Q  58 caaagagagtgcatgtaggatgtacgtgtttctaattccactctttatgatcatcatttgtttcatttt 126  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51035255 caaagaaagtgcatgtaggatgtacgtgtttctaattccactctttatgatcatcatttgtttcatttt 51035187  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 63 - 133
Target Start/End: Complemental strand, 10208692 - 10208622
Alignment:
Q  63 agagtgcatgtaggatgtacgtgtttctaattccactctttatgatcatcatttgtttcatttttcttttt 133  Q
    ||||||||||||  |||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||    
T  10208692 agagtgcatgtataatgtacgtgtttctaattccactcattacgatcatcatttgtttcatttttattttt 10208622  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 173
Target Start/End: Original strand, 48118104 - 48118275
Alignment:
Q  8 gagcagagacggttcactaatgttcccatgactc--aatttctcaataaattcaaagagagtgcatgtaggatgtacgtgtttctaattccactctttat 105  Q
    ||||| ||||||||||||||||||||| || |||  ||||||||||||||||| |||| | ||  |  |  | |||||||||||||||||||||| |||     
T  48118104 gagcaaagacggttcactaatgttcccgtggctctcaatttctcaataaattctaagaca-tgactcaataa-gtacgtgtttctaattccactcattac 48118201  T
Q  106 gatcatcatttgtttc------atttttctttttgagtgaataataatttctttcatgtttctcacaatattcc 173  Q
    ||||||||||||||||      |||||| ||||||||  ||| || || |||||||||||||||||||||||||    
T  48118202 gatcatcatttgtttcatttttatttttatttttgaggtaatcatcatgtctttcatgtttctcacaatattcc 48118275  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 33358349 - 33358293
Alignment:
Q  77 atgtacgtgtttctaattccactctttatgatcatcatttgtttcatttttcttttt 133  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  33358349 atgtatgtgtttctaattccactctttacgatcatcatttgtttcatttttattttt 33358293  T

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