View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18149_high_14 (Length: 253)
Name: NF18149_high_14
Description: NF18149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18149_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 14 - 134
Target Start/End: Complemental strand, 37069521 - 37069401
Alignment:
| Q |
14 |
cacagagtaaattggatcctctgcaatggctacagagatatttgattatgtatcataactagatgggtattctacattaaattaaataaaccccacttaa |
113 |
Q |
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| T |
37069521 |
cacagagtaaattggatcctctgcaatggctacagagatatttgattatgtatcataactagatgggtattctacattaaattaaataaaccccacttaa |
37069422 |
T |
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| Q |
114 |
atttatgttcctcttgtgacc |
134 |
Q |
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||||||||||||||||||||| |
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| T |
37069421 |
atttatgttcctcttgtgacc |
37069401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 29 - 130
Target Start/End: Complemental strand, 37079256 - 37079154
Alignment:
| Q |
29 |
atcctctgcaatggctacagagatatttgattatgtatcataactagatgggtattctacattaaattaaataaaccccacttaa-atttatgttcctct |
127 |
Q |
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||||||||||||||||||| | ||||||||||| ||||||||||||| |||| ||||||||| ||||||||||||||||||| || |||||||||||||| |
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| T |
37079256 |
atcctctgcaatggctacacatatatttgattaagtatcataactaggtggggattctacatcaaattaaataaaccccactaaatatttatgttcctct |
37079157 |
T |
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| Q |
128 |
tgt |
130 |
Q |
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||| |
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| T |
37079156 |
tgt |
37079154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 37066076 - 37065975
Alignment:
| Q |
18 |
gagtaaattggatcctctgcaatggctacagagatatttgattatgtatcataactagatgggtattctacattaaattaaataaaccccacttaaattt |
117 |
Q |
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||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||| |||| ||||| |||||||||||||||| || ||||||||| |
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| T |
37066076 |
gagtaaattggatcctctgcaatagctacacatatatttgattatgtatcataactaggtggggattctgcattaaattaaataaaaccagcttaaattt |
37065977 |
T |
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| Q |
118 |
at |
119 |
Q |
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|| |
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| T |
37065976 |
at |
37065975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 185 - 253
Target Start/End: Complemental strand, 37069350 - 37069282
Alignment:
| Q |
185 |
gtttgtttctatttatttcgataaataccgtgtgcaacactcgcaaggcaagtcgttgtattttacttt |
253 |
Q |
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||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
37069350 |
gtttgtttctatttatttccataaatactgtgtgcaacactcgcaaggcaagtcgttgtattttacttt |
37069282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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