View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18149_high_15 (Length: 246)
Name: NF18149_high_15
Description: NF18149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18149_high_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 37069249 - 37069043
Alignment:
| Q |
1 |
ttgtccaattttgaggattgaaacttagacagaaccatgaaaacctcagaaacatttgttcttgaattgaggtcatgagcggtacatattttggcaatct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37069249 |
ttgtccaattttgaggattgaaacttagacagaaccatgaaaacctca--aacatttgttcttgaattgaggtcatgagcggtacatattttggcaatct |
37069152 |
T |
|
| Q |
101 |
cagccatagaataagtaagatccaaagggtattcatccctcaaattaggatatccatgaaacctctaagattctccctaacattttctccttgaagaact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37069151 |
cagccatagaataagtaagatccaaagggtattcatccctcaaattaggatatccatgaaacctctaagattctccctaacattttctccttgaagaact |
37069052 |
T |
|
| Q |
201 |
tgactcaca |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
37069051 |
tgactcaca |
37069043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 6 - 230
Target Start/End: Complemental strand, 37065070 - 37064847
Alignment:
| Q |
6 |
caattttgaggattgaaacttagacagaaccatgaaaacctc-agaaacatttgttcttgaattgaggtcatgagcggtacatattttggcaatctcagc |
104 |
Q |
| |
|
|||| |||||||||||| | | |||| ||||||||||||| | |||||||||||| |||||||||||||||||| | |||| |||||||||||||| | |
|
|
| T |
37065070 |
caatattgaggattgaatcgtggacataaccatgaaaacccccagaaacatttgtccttgaattgaggtcatgatcaacacatcttttggcaatctcatc |
37064971 |
T |
|
| Q |
105 |
catagaataagtaagatccaaagggtattcatccctcaaattaggatatccatgaaacctctaagattctccctaacattttctccttgaagaacttgac |
204 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
37064970 |
catagaataagtaagatccaaagggtatttatccctcaaattagg--atccatgaaacctctaagattctccgtaacattttcaacttgaagaacttgac |
37064873 |
T |
|
| Q |
205 |
tcacagttgaagacagatgaagctga |
230 |
Q |
| |
|
||||||||||||||||| |||||||| |
|
|
| T |
37064872 |
tcacagttgaagacagaagaagctga |
37064847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 4 - 216
Target Start/End: Complemental strand, 37062762 - 37062552
Alignment:
| Q |
4 |
tccaattttgaggattgaaacttagacagaaccatgaaaacctcagaaacatttgttcttgaattgaggtcatgagcggtacatattttggcaatctcag |
103 |
Q |
| |
|
|||||| | |||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||| || ||| |||| |||| |||| |||||||||| |
|
|
| T |
37062762 |
tccaatgtagaggattgaatcttagacagaatcatgaaaacctcagaaacatttggtcttgaattaagatcacgagcaacacatcttttagcaatctcag |
37062663 |
T |
|
| Q |
104 |
ccatagaataagtaagatccaaagggtattcatccctcaaattaggatatccatgaaacctctaagattctccctaacattttctccttgaagaacttga |
203 |
Q |
| |
|
|||| ||| | | |||||||||||| |||||||| |||||||| || |||||||||||||||||| |||||||||||||| ||||||| |||||||||| |
|
|
| T |
37062662 |
ccattgaaaatgcaagatccaaaggatattcatctctcaaatttgg--atccatgaaacctctaagcttctccctaacattgtctccttcaagaacttga |
37062565 |
T |
|
| Q |
204 |
ctcacagttgaag |
216 |
Q |
| |
|
|||||||||||| |
|
|
| T |
37062564 |
ttcacagttgaag |
37062552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University