View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18149_high_17 (Length: 242)

Name: NF18149_high_17
Description: NF18149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18149_high_17
NF18149_high_17
[»] chr4 (4 HSPs)
chr4 (1-238)||(27575809-27576047)
chr4 (58-118)||(36495188-36495248)
chr4 (61-127)||(22683888-22683954)
chr4 (57-118)||(5658772-5658833)
[»] chr1 (3 HSPs)
chr1 (52-114)||(48832905-48832967)
chr1 (82-133)||(37733623-37733674)
chr1 (83-133)||(35690012-35690062)
[»] chr7 (3 HSPs)
chr7 (59-124)||(18349797-18349862)
chr7 (85-133)||(525984-526032)
chr7 (82-127)||(41360130-41360175)
[»] chr2 (7 HSPs)
chr2 (81-127)||(42973203-42973249)
chr2 (54-91)||(28028859-28028896)
chr2 (54-102)||(37402253-37402301)
chr2 (77-128)||(44633790-44633841)
chr2 (58-92)||(37561728-37561762)
chr2 (57-133)||(11275412-11275488)
chr2 (55-131)||(32596009-32596085)
[»] chr5 (2 HSPs)
chr5 (63-118)||(6413990-6414045)
chr5 (82-126)||(43012425-43012469)
[»] chr6 (2 HSPs)
chr6 (82-128)||(34026613-34026659)
chr6 (92-133)||(32888946-32888987)
[»] chr3 (1 HSPs)
chr3 (58-104)||(21513364-21513410)


Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 27576047 - 27575809
Alignment:
Q  1 gatgatgtcaatatatagtgattttttctttaaaattgattagtacttaaggttagaatttgtagcttttgacttcaaatgtgatttttacatttaaatt 100  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |    
T  27576047 gatgatgtcaacatatagtgattttttcttttaaattgattagtacttaaggttagaatttgtagcttttaacttcaaatgtaatttttacatttaaact 27575948  T
Q  101 tattattgaactcatttttacataaatatattcg-nnnnnnntaacattcacgttggtttttctcaatgacaatttagtcaatagtgcttcaaattgata 199  Q
    ||||||| ||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27575947 tattattaaactcatttttacataaatatattcgaaaaaaaataacattcacgttggtttttctcaatgacaatttagtcaatagtgcttcaaattgata 27575848  T
Q  200 ctgagaaatgaagaaaacatgctttgccaataaagttca 238  Q
    |||||||||||||||||||||||||||||||||||||||    
T  27575847 ctgagaaatgaagaaaacatgctttgccaataaagttca 27575809  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 36495248 - 36495188
Alignment:
Q  58 atttgtagcttttgacttcaaatgtgatttttacatttaaatttattattgaactcatttt 118  Q
    |||||||||||| || || |||||||| ||||||||||||||||||| || ||| ||||||    
T  36495248 atttgtagctttcgattttaaatgtgacttttacatttaaatttattgttcaacccatttt 36495188  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 127
Target Start/End: Original strand, 22683888 - 22683954
Alignment:
Q  61 tgtagcttttgacttcaaatgtgatttttacatttaaatttattattgaactcatttttacataaat 127  Q
    |||||||||||| |  ||| |||||||||||||| ||||||||| || |||||  ||||||||||||    
T  22683888 tgtagcttttgagtctaaacgtgatttttacattgaaatttattgttcaactcgcttttacataaat 22683954  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 5658833 - 5658772
Alignment:
Q  57 aatttgtagcttttgacttcaaatgtgatttttacatttaaatttattattgaactcatttt 118  Q
    |||||||||||||||||  ||||| | ||||||||||| ||||||| | || ||||||||||    
T  5658833 aatttgtagcttttgacaccaaatataatttttacattcaaatttactgttcaactcatttt 5658772  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 48832905 - 48832967
Alignment:
Q  52 gttagaatttgtagcttttgacttcaaatgtgatttttacatttaaatttattattgaactca 114  Q
    ||||| ||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||    
T  48832905 gttaggatttgtagcttttgactccaaatgtgatttttacactcaaatttattattgaactca 48832967  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 133
Target Start/End: Complemental strand, 37733674 - 37733623
Alignment:
Q  82 tgatttttacatttaaatttattattgaactcatttttacataaatatattc 133  Q
    |||||||  ||||||||||||||||| ||||||||| ||||||||| |||||    
T  37733674 tgattttaccatttaaatttattattcaactcatttatacataaatgtattc 37733623  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 133
Target Start/End: Complemental strand, 35690062 - 35690012
Alignment:
Q  83 gatttttacatttaaatttattattgaactcatttttacataaatatattc 133  Q
    |||||| |||||||||||||||||| |||| | |||||||||| |||||||    
T  35690062 gattttgacatttaaatttattattcaacttacttttacataactatattc 35690012  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 124
Target Start/End: Original strand, 18349797 - 18349862
Alignment:
Q  59 tttgtagcttttgacttcaaatgtgatttttacatttaaatttattattgaactcatttttacata 124  Q
    ||||||||||||||||||||| |||||||||||| | ||||||||| || |||||| |||| ||||    
T  18349797 tttgtagcttttgacttcaaacgtgatttttacactcaaatttattgttcaactcaattttgcata 18349862  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 526032 - 525984
Alignment:
Q  85 tttttacatttaaatttattattgaactcatttttacataaatatattc 133  Q
    ||||||||||||||||||||||| |||||| |||||| | |||||||||    
T  526032 tttttacatttaaatttattattcaactcacttttacctgaatatattc 525984  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 41360130 - 41360175
Alignment:
Q  82 tgatttttacatttaaatttattattgaactcatttttacataaat 127  Q
    |||| |||||||| |||||||||||| ||| |||||||||||||||    
T  41360130 tgatctttacattaaaatttattattcaacacatttttacataaat 41360175  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 81 - 127
Target Start/End: Original strand, 42973203 - 42973249
Alignment:
Q  81 gtgatttttacatttaaatttattattgaactcatttttacataaat 127  Q
    ||||||||||||||  ||||||||||| |||||||||||||||||||    
T  42973203 gtgatttttacattggaatttattattcaactcatttttacataaat 42973249  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 91
Target Start/End: Original strand, 28028859 - 28028896
Alignment:
Q  54 tagaatttgtagcttttgacttcaaatgtgatttttac 91  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  28028859 tagaatttgtagcttttgactacaaatgtgatttttac 28028896  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 37402301 - 37402253
Alignment:
Q  54 tagaatttgtagcttttgacttcaaatgtgatttttacatttaaattta 102  Q
    ||||||||||||||||||||||||||  ||||| ||||| |||||||||    
T  37402301 tagaatttgtagcttttgacttcaaacatgattgttacacttaaattta 37402253  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 128
Target Start/End: Complemental strand, 44633841 - 44633790
Alignment:
Q  77 aaatgtgatttttacatttaaatttattattgaactcatttttacataaata 128  Q
    |||||||||||||| ||| ||||||||| || |||||| |||||||||||||    
T  44633841 aaatgtgatttttatattaaaatttattgttcaactcaattttacataaata 44633790  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 92
Target Start/End: Original strand, 37561728 - 37561762
Alignment:
Q  58 atttgtagcttttgacttcaaatgtgatttttaca 92  Q
    ||||||| |||||||||||||||||||||||||||    
T  37561728 atttgtaccttttgacttcaaatgtgatttttaca 37561762  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 133
Target Start/End: Complemental strand, 11275488 - 11275412
Alignment:
Q  57 aatttgtagcttttgacttcaaatgtgatttttacatttaaatttattattgaactcatttttacataaatatattc 133  Q
    ||||||||||||| || || |||||  ||||||||||| || ||||||||| |||||| |||||  || ||||||||    
T  11275488 aatttgtagctttcgagtttaaatggaatttttacattgaattttattattcaactcacttttatttacatatattc 11275412  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 131
Target Start/End: Original strand, 32596009 - 32596085
Alignment:
Q  55 agaatttgtagcttttgacttcaaatgtgatttttacatttaaatttattattgaactcatttttacataaatatat 131  Q
    |||||||||| ||||||| |  |||  ||||||||||||  ||||| || ||| |||||| ||||||||||||||||    
T  32596009 agaatttgtaacttttgattctaaaattgatttttacatacaaattcataattcaactcacttttacataaatatat 32596085  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 118
Target Start/End: Original strand, 6413990 - 6414045
Alignment:
Q  63 tagcttttgacttcaaatgtgatttttacatttaaatttattattgaactcatttt 118  Q
    |||| ||||||| ||||||| ||||||||||| |||||||||||| || |||||||    
T  6413990 tagcatttgactccaaatgtaatttttacattcaaatttattattcaattcatttt 6414045  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 126
Target Start/End: Complemental strand, 43012469 - 43012425
Alignment:
Q  82 tgatttttacatttaaatttattattgaactcatttttacataaa 126  Q
    ||||||||||| | ||||||||| |||| ||||||||||||||||    
T  43012469 tgatttttacactcaaatttattgttgacctcatttttacataaa 43012425  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 128
Target Start/End: Complemental strand, 34026659 - 34026613
Alignment:
Q  82 tgatttttacatttaaatttattattgaactcatttttacataaata 128  Q
    ||||||||||| ||||||| |||||| ||||||||||||||| ||||    
T  34026659 tgatttttacacttaaattaattattcaactcatttttacatgaata 34026613  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 32888987 - 32888946
Alignment:
Q  92 atttaaatttattattgaactcatttttacataaatatattc 133  Q
    ||||||||||||| || |||||| ||||||||||||||||||    
T  32888987 atttaaatttattgttcaactcacttttacataaatatattc 32888946  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 21513410 - 21513364
Alignment:
Q  58 atttgtagcttttgacttcaaatgtgatttttacatttaaatttatt 104  Q
    ||||||||||||||||| |||| |||||||||||| | |||||||||    
T  21513410 atttgtagcttttgactccaaacgtgatttttacactcaaatttatt 21513364  T

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