View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18149_high_7 (Length: 375)
Name: NF18149_high_7
Description: NF18149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18149_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 12 - 359
Target Start/End: Original strand, 11624251 - 11624598
Alignment:
| Q |
12 |
atgaggcggaaaccaaggaacattccaaaaaggagcagggtaaaatgacatgggaaatcccggaggacacaaagtttgcggcgagggaattgcaccagaa |
111 |
Q |
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| T |
11624251 |
atgaggcggaaaccaaggaacattccaaaaaggagcagggtaaaatgacatgggaaatcccggaggacacaaagtttgcggcgagggaattgcgccagaa |
11624350 |
T |
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| Q |
112 |
ctccaagtataaggccaaggaacactagtcatacatggaacttgaggaatgaaaccattattttgctgtggcaatgattcttgtgtcatgtttttaccac |
211 |
Q |
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| T |
11624351 |
ctccaagtataaggccaaggaacactagtcatacatggaacttggggaatgaaaccattatttttctgtggcaatgattcttgtgtcatgtttttaccac |
11624450 |
T |
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| Q |
212 |
tttcctccatggattttgaaactgtaacagaagacgcactcgaaaaacgatcaccattatttcgagtgtcgttaagaacctttttctctgcaggattgag |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11624451 |
tttcctccatggattttgaaactgtaacagaagacgcacttgaaaaacgatcaccattatttcgagtgtcgttaagaacctttttctctgcaggattgag |
11624550 |
T |
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| Q |
312 |
atcatttgacattgaatcatagatatgtggatgatccaacccaaagtt |
359 |
Q |
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| T |
11624551 |
atcatttgacattgaatcatagatatgtggatgatccaacccaaagtt |
11624598 |
T |
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