View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18149_low_10 (Length: 325)
Name: NF18149_low_10
Description: NF18149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18149_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 38 - 308
Target Start/End: Complemental strand, 8594469 - 8594199
Alignment:
| Q |
38 |
acacattttttg-ttctcagtact--gttagttggcattttcttcataaaaaagtggcataaactctagacttctactgatatataaaaataggagaggc |
134 |
Q |
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| T |
8594469 |
acacattttttggttctcagtacacagttagttggcattttcttcataaaaaagtggcataaactttagacttctactgatatataaaaataggagaggc |
8594370 |
T |
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| Q |
135 |
aaggaagggtagagaagaagagtaacaaaatgaataacacttgttcctctcaaacaccacatcaatnnnnnnnnnnnnttctaccacttaaactgccaat |
234 |
Q |
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| T |
8594369 |
aaggatgggtagagaagaagagtaacaaaatgaataacacttgttcctctcaaacaccacatcaatgaaaaaaaac---tctacgacttaaactgccaat |
8594273 |
T |
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| Q |
235 |
cctccttgtttagccgcgcaccaccacagtcaaagatccagcgatcttcatgtccactgtctttctttttcctt |
308 |
Q |
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| T |
8594272 |
cctccttgtttagccgcgcaccaccacagtcaaagatccagagatcttcacgtccactgtctttctttttcctt |
8594199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 61 - 310
Target Start/End: Original strand, 8557162 - 8557414
Alignment:
| Q |
61 |
gttagttggcattttcttcataaaaaagtggcataaactctagacttctactgatat--ataaaaataggagaggcaaggaagggtagagaagaagagta |
158 |
Q |
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| T |
8557162 |
gttagttggcattttcttcataaatatgtggcataaactctagaattctactgatatatataaaaataggagaggcaaggaagggtagagaagaagagta |
8557261 |
T |
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| Q |
159 |
acaaaatgaataacacttgttcctctcaaacaccacatcaat-nnnnnnnnnnnnttctaccacttaaactgccaatcctccttgtttagccgcgcacca |
257 |
Q |
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| T |
8557262 |
gcaaaaagaatcacacttattcctctcaaacaccacatcaataaaaaaaaaaaaactctaccacttaaactgccaatcctccttgtttagccgcgcacca |
8557361 |
T |
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| Q |
258 |
ccacagtcaaagatccagcgatcttcatgtccactgtctttctttttcctttg |
310 |
Q |
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| T |
8557362 |
ccacagtcaaagatccagcgatcttcacgtccactgtctttctttttcctttg |
8557414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 36 - 198
Target Start/End: Complemental strand, 8646697 - 8646531
Alignment:
| Q |
36 |
aaacacattttttg-ttctcagtact--gttagttggcattttcttcataaaaaagtggcataaactctagacttctactgatatataaaaa-taggaga |
131 |
Q |
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| T |
8646697 |
aaacacattttttggttctcagtacacagttagttggcattttcttcataaaaatgtggcataaactctagacttctattgatatataaaaattaggaga |
8646598 |
T |
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| Q |
132 |
ggcaaggaagggtagagaagaagagtaacaaaatgaataacacttgttcctctcaaacaccacatca |
198 |
Q |
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| T |
8646597 |
agcaaggaagggtagagaagaatagtagcaaaaagaataacacttgttcctttcaaacaccacatca |
8646531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 36 - 194
Target Start/End: Original strand, 8611953 - 8612115
Alignment:
| Q |
36 |
aaacacattttttg-ttctcagtact--gttagttggcattttcttcataaaaaagtggcataaactctagacttctactgatatataaaaat-aggaga |
131 |
Q |
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|||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| |||||| |
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| T |
8611953 |
aaacacattttttggttctcagtacacagttagttggcattttcttcataaaaatgtggcctaaactctagacttctattgatatataaaaattaggaga |
8612052 |
T |
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| Q |
132 |
ggcaaggaagggtagagaagaagagtaacaaaatgaataacacttgttcctctcaaacaccac |
194 |
Q |
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| T |
8612053 |
ggcaaggaagggtagagaagaatagtagcaaaaagaataacacttgttcctttcaaacaccac |
8612115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 43 - 197
Target Start/End: Complemental strand, 8567063 - 8566903
Alignment:
| Q |
43 |
ttttttgttctcagtactgttagttggcattttcttcataaaaaagtggcata--aactctagacttctactgata----tataaaaataggagaggcaa |
136 |
Q |
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|||||||||| |||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| || ||||||||||||||||| || |
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| T |
8567063 |
ttttttgttcccagtacagttagttggcattttcttcataaaaatgtggcatataaactctagacttctacatctactgatataaaaataggagagggaa |
8566964 |
T |
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| Q |
137 |
ggaagggtagagaagaagagtaacaaaatgaataacacttgttcctctcaaacaccacatc |
197 |
Q |
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||||||||||||||||| |||| ||||| ||| |||| |||||| ||| |||||||||||| |
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| T |
8566963 |
ggaagggtagagaagaatagtagcaaaaagaacaacagttgttcatctaaaacaccacatc |
8566903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 308
Target Start/End: Complemental strand, 8566860 - 8566784
Alignment:
| Q |
233 |
atcctccttgtttagccgcgcaccaccacagtcaaag-atccagcgatcttcatgtccactgtctttctttttcctt |
308 |
Q |
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||||||||||||||||||| |||| |||| ||||||| ||||| ||| || |||||||| ||||||||||||||||| |
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| T |
8566860 |
atcctccttgtttagccgcacaccgccaccgtcaaagaatccaacgacctccatgtccattgtctttctttttcctt |
8566784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 8555593 - 8555557
Alignment:
| Q |
20 |
ctgctcgcaaccaaacaaacacattttttgttctcag |
56 |
Q |
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| T |
8555593 |
ctgctcgcaaccaaacaaacacattttttgttctcag |
8555557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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