View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18149_low_12 (Length: 299)
Name: NF18149_low_12
Description: NF18149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18149_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 294
Target Start/End: Original strand, 15815640 - 15815929
Alignment:
| Q |
17 |
cagaatcagtgtttatccataaaagaagatcgttaacgttggatcggtatgatgtgttgtttgttttttctgttgaattctggcaaaaatttaacatgta |
116 |
Q |
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| T |
15815640 |
cagaatcagtgtttatccatagaagaagatttctaacgttggatcggtatgatgtgttgtttgttttttctgttgaattctggcaaaaatttaacctgta |
15815739 |
T |
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| Q |
117 |
atatggtgattgtgcatttgttaaggtgaagagaaaaat------------gaagcttagaaaccttgtagtacaagtcatgttcatttgtgacatgttt |
204 |
Q |
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| T |
15815740 |
atatggtgattgtgcatttgttaaggtgaagagaaaaatatgaagtagaatgaagcttagaaaccttgcagtacaagtcatgttcatttgtgacatgttt |
15815839 |
T |
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| Q |
205 |
atggttaagtttttactttcaactattttcaaaaatagtagggagacatatatgtatgttaacagaaaagtttatgtattctgtgctgct |
294 |
Q |
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| T |
15815840 |
atggttaagtttttactttcaactatttcccaaaacagtagggagacatatatgtatgttaacagaaaagtttatgtattctgtgctgct |
15815929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 15802147 - 15802270
Alignment:
| Q |
16 |
tcagaatcagtgtttatccataaaagaagatcgttaacgttggatcggtatgatgtgttgtttgttttttctgttgaattctggcaaaaatttaacatgt |
115 |
Q |
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| T |
15802147 |
tcagaatctgagtttatccatgagagaaggctattaacgttggattggtatgaagtgttaagtgttttttctgttgaattctcgcaaatactgtacaagt |
15802246 |
T |
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| Q |
116 |
aatatggtgattgtgcatttgtta |
139 |
Q |
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| T |
15802247 |
aaaatggtgattgtgcagttgtta |
15802270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 15802297 - 15802334
Alignment:
| Q |
151 |
aaaatgaagcttagaaaccttgtagtacaagtcatgtt |
188 |
Q |
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| T |
15802297 |
aaaatgaagcttagaaaccttgtagtacaagtcatgtt |
15802334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 139
Target Start/End: Original strand, 15807798 - 15807889
Alignment:
| Q |
48 |
gttaacgttggatcggtatgatgtgttgtttgttttttctgttgaattctggcaaaaatttaacatgtaatatggtgattgtgcatttgtta |
139 |
Q |
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| T |
15807798 |
gttaacgttggattgatatgaagtgttgactgttttttcagtagaattctggcaataactgtacatgtaaaatggtgattgcgcattcgtta |
15807889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 188
Target Start/End: Original strand, 15807918 - 15807953
Alignment:
| Q |
153 |
aatgaagcttagaaaccttgtagtacaagtcatgtt |
188 |
Q |
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| T |
15807918 |
aatgaagcttagaaaccttgtagtacaagtcatgtt |
15807953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 188
Target Start/End: Original strand, 15794500 - 15794535
Alignment:
| Q |
153 |
aatgaagcttagaaaccttgtagtacaagtcatgtt |
188 |
Q |
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| T |
15794500 |
aatgaagcttagaaaccttgtagtataagtcatgtt |
15794535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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