View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18149_low_17 (Length: 244)

Name: NF18149_low_17
Description: NF18149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18149_low_17
NF18149_low_17
[»] chr3 (3 HSPs)
chr3 (1-227)||(34760810-34761041)
chr3 (149-217)||(43815377-43815445)
chr3 (85-134)||(25447298-25447347)
[»] chr4 (2 HSPs)
chr4 (144-216)||(43729793-43729865)
chr4 (82-131)||(28300350-28300399)
[»] chr8 (8 HSPs)
chr8 (153-218)||(29215306-29215371)
chr8 (152-216)||(29317308-29317372)
chr8 (152-216)||(29340273-29340337)
chr8 (152-217)||(29363663-29363728)
chr8 (161-217)||(29245433-29245489)
chr8 (173-217)||(29253757-29253801)
chr8 (149-217)||(29357101-29357169)
chr8 (52-108)||(29592194-29592250)
[»] chr1 (3 HSPs)
chr1 (65-134)||(9572142-9572211)
chr1 (89-133)||(3495693-3495737)
chr1 (85-134)||(48830130-48830179)
[»] chr7 (3 HSPs)
chr7 (21-104)||(25422347-25422431)
chr7 (85-134)||(20526413-20526462)
chr7 (85-134)||(22283798-22283847)
[»] chr6 (2 HSPs)
chr6 (64-134)||(1402963-1403033)
chr6 (85-134)||(2735036-2735085)
[»] chr5 (2 HSPs)
chr5 (188-218)||(14497849-14497879)
chr5 (85-134)||(26516367-26516416)
[»] chr2 (1 HSPs)
chr2 (89-133)||(44439418-44439462)


Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 34761041 - 34760810
Alignment:
Q  1 tatactgtcgtaaacattcgtgagactgtttgagaaggtcatggaaacaatttatgacatgtttataagctctcagtgatcgcctatgaaaacagtttat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34761041 tatactgtcgtaaacattcgtgagactgtttgagaaggtcatggaaacaatttatgacatgtttataagctctcagtgatcgcctatgaaaacagtttat 34760942  T
Q  101 agcttatacaaacgtagtttaactttattttatc-----nnnnnnnnattttgttgcagagtccagatggtgatttgatagattgtattttatctcatca 195  Q
    |||||||| |||| ||||||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34760941 agcttatataaacatagtttaactttattttatctttttatttatttattttgttgcagagtccagatggtgatttgatagattgtattttatctcatca 34760842  T
Q  196 acaaccagcttttgatcatcctaagcttaaag 227  Q
     |||||||||||||||||||||||||||||||    
T  34760841 tcaaccagcttttgatcatcctaagcttaaag 34760810  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 217
Target Start/End: Complemental strand, 43815445 - 43815377
Alignment:
Q  149 ttgcagagtccagatggtgatttgatagattgtattttatctcatcaacaaccagcttttgatcatcct 217  Q
    ||||||||||| || |||||| | ||||||||| ||||| | ||| |||||||||||||||||||||||    
T  43815445 ttgcagagtcctgacggtgatatcatagattgtgttttaacgcataaacaaccagcttttgatcatcct 43815377  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 25447298 - 25447347
Alignment:
Q  85 tatgaaaacagtttatagcttatacaaacgtagtttaactttattttatc 134  Q
    ||||||||||||||||||||||||||||   | ||||| |||||||||||    
T  25447298 tatgaaaacagtttatagcttatacaaaaacaatttaagtttattttatc 25447347  T

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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 43729865 - 43729793
Alignment:
Q  144 ttttgttgcagagtccagatggtgatttgatagattgtattttatctcatcaacaaccagcttttgatcatcc 216  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  43729865 ttttgttgcagagtccagatggagatttgatagattgtattatatctcatcaacaaccagcttttgaccatcc 43729793  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 131
Target Start/End: Original strand, 28300350 - 28300399
Alignment:
Q  82 gcctatgaaaacagtttatagcttatacaaacgtagtttaactttatttt 131  Q
    ||||||||||| |||||||||||||||||||   | ||||||||||||||    
T  28300350 gcctatgaaaatagtttatagcttatacaaaaacaatttaactttatttt 28300399  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 218
Target Start/End: Complemental strand, 29215371 - 29215306
Alignment:
Q  153 agagtccagatggtgatttgatagattgtattttatctcatcaacaaccagcttttgatcatccta 218  Q
    ||||||| ||||||||| | ||||||||| || |||||||| ||||||| ||||||||||||||||    
T  29215371 agagtcctgatggtgatatcatagattgtgttgtatctcataaacaaccggcttttgatcatccta 29215306  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 29317308 - 29317372
Alignment:
Q  152 cagagtccagatggtgatttgatagattgtattttatctcatcaacaaccagcttttgatcatcc 216  Q
    |||||||| ||||||||| | ||||||||||||||  | ||| |||||| |||||||||||||||    
T  29317308 cagagtcctgatggtgatatcatagattgtattttgacacataaacaactagcttttgatcatcc 29317372  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 29340273 - 29340337
Alignment:
Q  152 cagagtccagatggtgatttgatagattgtattttatctcatcaacaaccagcttttgatcatcc 216  Q
    |||||||| ||||||||| | ||||| ||||||||  ||||| |||||| |||||||||||||||    
T  29340273 cagagtcctgatggtgatataatagactgtattttgactcataaacaactagcttttgatcatcc 29340337  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 217
Target Start/End: Original strand, 29363663 - 29363728
Alignment:
Q  152 cagagtccagatggtgatttgatagattgtattttatctcatcaacaaccagcttttgatcatcct 217  Q
    |||||||| ||||||||| | ||||||||||| ||| ||||| ||||   ||||||||||||||||    
T  29363663 cagagtcctgatggtgatatcatagattgtatattaactcataaacagttagcttttgatcatcct 29363728  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 29245433 - 29245489
Alignment:
Q  161 gatggtgatttgatagattgtattttatctcatcaacaaccagcttttgatcatcct 217  Q
    ||||||||| | || ||||| |||||  ||||| |||||||||||||||||||||||    
T  29245433 gatggtgatattatcgattgcattttgactcataaacaaccagcttttgatcatcct 29245489  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 29253757 - 29253801
Alignment:
Q  173 atagattgtattttatctcatcaacaaccagcttttgatcatcct 217  Q
    ||||||||| || | |||||| |||||||||||||||||||||||    
T  29253757 atagattgtgttatgtctcataaacaaccagcttttgatcatcct 29253801  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 217
Target Start/End: Original strand, 29357101 - 29357169
Alignment:
Q  149 ttgcagagtccagatggtgatttgatagattgtattttatctcatcaacaaccagcttttgatcatcct 217  Q
    ||||||||||| ||||||||| | ||||| ||| ||||  ||||| ||||||| ||||| |||||||||    
T  29357101 ttgcagagtcccgatggtgatatcatagactgtgttttgactcataaacaaccggctttcgatcatcct 29357169  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 29592194 - 29592250
Alignment:
Q  52 ttatgacatgtttataagctctcagtgatcgcctatgaaaacagtttatagcttata 108  Q
    |||||||||||  |||||||||| | ||| || ||||||||||| ||||||||||||    
T  29592194 ttatgacatgtccataagctctctgggatagcttatgaaaacagattatagcttata 29592250  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 134
Target Start/End: Original strand, 9572142 - 9572211
Alignment:
Q  65 ataagctctcagtgatcgcctatgaaaacagtttatagcttatacaaacgtagtttaactttattttatc 134  Q
    ||||| ||||| |||| || ||||||||| | |||||||||||||||| | | |||||||||||||||||    
T  9572142 ataagttctcaatgatggcatatgaaaacggcttatagcttatacaaaagcaatttaactttattttatc 9572211  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 3495693 - 3495737
Alignment:
Q  89 aaaacagtttatagcttatacaaacgtagtttaactttattttat 133  Q
    |||||| ||||||| ||||||||||||| ||||||||||||||||    
T  3495693 aaaacaatttataggttatacaaacgtaatttaactttattttat 3495737  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 48830130 - 48830179
Alignment:
Q  85 tatgaaaacagtttatagcttatacaaacgtagtttaactttattttatc 134  Q
    ||||||||||||||||||||||||  ||  |||||| |||||||||||||    
T  48830130 tatgaaaacagtttatagcttatatgaaaatagtttgactttattttatc 48830179  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 25422431 - 25422347
Alignment:
Q  21 tgagactgtttgaga-aggtcatggaaacaatttatgacatgtttataagctctcagtgatcgcctatgaaaacagtttatagct 104  Q
    |||||||||||| || || | |||||||||  ||||||||||||||||| |||||  |||| |||| |||||||| |||||||||    
T  25422431 tgagactgtttgggagagcttatggaaacaccttatgacatgtttataaactctccatgatagcctgtgaaaacaatttatagct 25422347  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 134
Target Start/End: Complemental strand, 20526462 - 20526413
Alignment:
Q  85 tatgaaaacagtttatagcttatacaaacgtagtttaactttattttatc 134  Q
    ||||||||||| ||||||| | ||||||| || |||||||||||||||||    
T  20526462 tatgaaaacagcttatagcatgtacaaacataatttaactttattttatc 20526413  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 22283798 - 22283847
Alignment:
Q  85 tatgaaaacagtttatagcttatacaaacgtagtttaactttattttatc 134  Q
    |||||||||||||||||||| |||||||   | |||||||||||||||||    
T  22283798 tatgaaaacagtttatagctgatacaaaaacaatttaactttattttatc 22283847  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 134
Target Start/End: Complemental strand, 1403033 - 1402963
Alignment:
Q  64 tataagctctcagtgatcgcctatgaaaacagtttatagcttatacaaacgtagtttaactttattttatc 134  Q
    |||||| ||||  |||| || |||||||||| |||||||||||||  ||  ||||||||||||||||||||    
T  1403033 tataagatctccatgatagcttatgaaaacaatttatagcttatatgaaaatagtttaactttattttatc 1402963  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 134
Target Start/End: Complemental strand, 2735085 - 2735036
Alignment:
Q  85 tatgaaaacagtttatagcttatacaaacgtagtttaactttattttatc 134  Q
    ||||||||||| |||||| |||||||||  || |||||||||||||||||    
T  2735085 tatgaaaacagcttatagattatacaaaaataatttaactttattttatc 2735036  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 218
Target Start/End: Complemental strand, 14497879 - 14497849
Alignment:
Q  188 tctcatcaacaaccagcttttgatcatccta 218  Q
    |||||||||||||||||||||||||||||||    
T  14497879 tctcatcaacaaccagcttttgatcatccta 14497849  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 134
Target Start/End: Complemental strand, 26516416 - 26516367
Alignment:
Q  85 tatgaaaacagtttatagcttatacaaacgtagtttaactttattttatc 134  Q
    ||||||||||||||||| ||||||  || ||||||| |||||||||||||    
T  26516416 tatgaaaacagtttataacttatatgaaagtagtttgactttattttatc 26516367  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 44439418 - 44439462
Alignment:
Q  89 aaaacagtttatagcttatacaaacgtagtttaactttattttat 133  Q
    |||||| |||||||||||||||||   ||||||||||||||||||    
T  44439418 aaaacaatttatagcttatacaaaaacagtttaactttattttat 44439462  T

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