View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18149_low_2 (Length: 417)
Name: NF18149_low_2
Description: NF18149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18149_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 83 - 408
Target Start/End: Original strand, 54149587 - 54149911
Alignment:
| Q |
83 |
gagggagagaataagttttagctttaattttagcgtgaaagaatctcgttgatgtgatctcatttttattttggtgattctcaagtataaataaggagca |
182 |
Q |
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| T |
54149587 |
gagggagagaataagttttagctttaattttagcgtgaaagaatatcgttgatgtgatctcatttttattttggtgattcacaagtataaataaggagca |
54149686 |
T |
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| Q |
183 |
gaaattattgtgattgaatactgtctcaagtactataaaaaagaccaaacaacaatgaaaaatcaatcaagtcaaagtttgcaatgttgtttgtcttctc |
282 |
Q |
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| T |
54149687 |
gaaattattgtgattgaatactgtctcaagtactataaaaaagaccaaacaacaatgaaaaatca-tcaagtcaaagtttgcaatgttgtttgtcttctc |
54149785 |
T |
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| Q |
283 |
ttctactagtacattatttatcacaccttcccccaacccttttattttcttacagaattcttgtatttgtgtgcattggatttatgcatatgctctagct |
382 |
Q |
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| T |
54149786 |
ttctactagtacattatttatcacaccttcccccaacccttttattttcttacagaattcttgtatttgtgtgcattggatttatgcatatgctctagct |
54149885 |
T |
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| Q |
383 |
ctaccaatcgttacattattgatgat |
408 |
Q |
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| T |
54149886 |
ctaccaatcgttacattattgatgat |
54149911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 54149529 - 54149563
Alignment:
| Q |
17 |
acccattccttagattgatagacaacagtgtgatt |
51 |
Q |
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| T |
54149529 |
acccattccttagattgatagacaacagtgtgatt |
54149563 |
T |
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