View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18149_low_3 (Length: 415)
Name: NF18149_low_3
Description: NF18149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18149_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 19 - 400
Target Start/End: Complemental strand, 13115572 - 13115191
Alignment:
| Q |
19 |
atgtttcatcatgatgacaatcttcaaaggaaaatccataggggacccaaaatatgcacctgtgaaaggcacagtgttcaaccaacttttcaacttcaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13115572 |
atgtttcatcatgatgacaatcttcaaaggaaaatccataggggacccaaaatatgcacctgtgaaaggcacagtgttcaaccaacttttcaacttcaag |
13115473 |
T |
|
| Q |
119 |
aaactccatgattaccatgctcaattagcaaaaactcatccaactatgaggcttcttgcaccaaatcaaagtgagttgtacacaatagatgtgagaaata |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13115472 |
aaactccatgattaccatgctcaattagcaaaaactcatccaactatgaggcttcttgcaccaaatcaaagtgagttgtacacaatagatgtgagaaata |
13115373 |
T |
|
| Q |
219 |
ttgaacatatattgaaaaccaattttgataagtattctaaaggtaagtataataaagatattattaccgatcttcttggtgagggaatttttgctgttga |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
13115372 |
ttgaacatatattgaaaaccaattttgataagtattctaaaggtaagtataataaagatattattactgatcttcttggtgaggggatttttgctgttga |
13115273 |
T |
|
| Q |
319 |
tggtgacaagtggaagcagcagagaaaaattgctagctatgaattttctacaagagttcttagagattttagttgttctgtg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13115272 |
tggtgacaagtggaagcagcagagaaaaattgctagctatgaattttctacaagagttcttagagattttagttgttctgtg |
13115191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 400
Target Start/End: Original strand, 18669866 - 18670247
Alignment:
| Q |
19 |
atgtttcatcatgatgacaatcttcaaaggaaaatccataggggacccaaaatatgcacctgtgaaaggcacagtgttcaaccaacttttcaacttcaag |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
18669866 |
atgtttcatcatgatgacaatcttcaaaggaaaatccataggggacccaaaatatgcacctgtaaaaggcacagtgttcaaccaactattctacttcaag |
18669965 |
T |
|
| Q |
119 |
aaactccatgattaccatgctcaattagcaaaaactcatccaactatgaggcttcttgcaccaaatcaaagtgagttgtacacaatagatgtgagaaata |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18669966 |
aaactccatgattaccatgctcaattagcaaaaactcatccaactatgaggcttcttgcaccaaatcaaagtgagttgtacagaatagatgtgagaaata |
18670065 |
T |
|
| Q |
219 |
ttgaacatatattgaaaaccaattttgataagtattctaaaggtaagtataataaagatattattaccgatcttcttggtgagggaatttttgctgttga |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||| |||||||||||||| |
|
|
| T |
18670066 |
ttgaacatatattgaaaaccaattttgataagtattctaaaggtaagtataatcaagatattattactgatctttttggtgaggggatttttgctgttga |
18670165 |
T |
|
| Q |
319 |
tggtgacaagtggaagcagcagagaaaaattgctagctatgaattttctacaagagttcttagagattttagttgttctgtg |
400 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
18670166 |
tggtgacaagtggaagcaacagaggaaaattgctagctatgaattttctacaagagttcttcgagattttagttgttctgtg |
18670247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 400
Target Start/End: Complemental strand, 13106098 - 13105717
Alignment:
| Q |
19 |
atgtttcatcatgatgacaatcttcaaaggaaaatccataggggacccaaaatatgcacctgtgaaaggcacagtgttcaaccaacttttcaacttcaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| |||| ||| ||||||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
13106098 |
atgtttcatcatgatgacaatcttcaaaggaaaatcaataggggactcaaagtatacacctgttaaaggcacagtgttcaaccaacttttctacttcaag |
13105999 |
T |
|
| Q |
119 |
aaactccatgattaccatgctcaattagcaaaaactcatccaactatgaggcttcttgcaccaaatcaaagtgagttgtacacaatagatgtgagaaata |
218 |
Q |
| |
|
|||||| ||||||||||||||||||| || |||| |||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
13105998 |
aaactctatgattaccatgctcaattggccaaaattcatccaacttatagacttcttgcaccaaatcatagtgagttgtacacaatagatgtgagaaata |
13105899 |
T |
|
| Q |
219 |
ttgaacatatattgaaaaccaattttgataagtattctaaaggtaagtataataaagatattattaccgatcttcttggtgagggaatttttgctgttga |
318 |
Q |
| |
|
|||||||| |||||||||| || |||||||| ||||||| ||||||||||| | |||||||||| || |||||| |||||||||| ||||||| |||||| |
|
|
| T |
13105898 |
ttgaacatgtattgaaaacaaactttgataaatattctagaggtaagtatagtcaagatattatgacagatctttttggtgaggggatttttgttgttga |
13105799 |
T |
|
| Q |
319 |
tggtgacaagtggaagcagcagagaaaaattgctagctatgaattttctacaagagttcttagagattttagttgttctgtg |
400 |
Q |
| |
|
|||| ||||||||||||||||||| || |||||||||||||||| || |||||||||||||||||||||||||| |||||| |
|
|
| T |
13105798 |
tggtaacaagtggaagcagcagaggaaggttgctagctatgaattctccacaagagttcttagagattttagttgctctgtg |
13105717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 400
Target Start/End: Complemental strand, 13100306 - 13099922
Alignment:
| Q |
19 |
atgtttcatcatgatgacaatcttcaaaggaaaatccataggggacccaaaatatgcacctgtgaaaggcacagtgttcaaccaacttttcaacttcaag |
118 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||| |
|
|
| T |
13100306 |
atgtttcatcttgatgacaatcttcaaaggaaaatcaataggggacccaaaatatgcacctgttaaaggcacagtgttcaaccatcttttctacttcaac |
13100207 |
T |
|
| Q |
119 |
aaactccatgattaccatgctcaattagcaaaaactcatccaactatgaggcttcttgcaccaaatcaaagtga---gttgtacacaatagatgtgagaa |
215 |
Q |
| |
|
|||||| |||||||||| |||||| | || |||| |||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13100206 |
aaactctatgattaccaagctcaaatggccaaaattcatccaacttatagacttcttgcaccaaatcaaagtgatcagttgtacacaatagatgtgagaa |
13100107 |
T |
|
| Q |
216 |
atattgaacatatattgaaaaccaattttgataagtattctaaaggtaagtataataaagatattattaccgatcttcttggtgagggaatttttgctgt |
315 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||||||| ||||||||||| | ||||| |||| || |||||| |||||||||| |||||||| || |
|
|
| T |
13100106 |
atattgaacatgtattgaaaaccaattttgataaatattctagaggtaagtatagtcaagatgttatgacagatctttttggtgaggggatttttgccgt |
13100007 |
T |
|
| Q |
316 |
tgatggtgacaagtggaagcagcagagaaaaattgctagctatgaattttctacaagagttcttagagattttagttgttctgtg |
400 |
Q |
| |
|
||||||||||||||||| |||||||| ||| |||| ||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
13100006 |
tgatggtgacaagtggagacagcagaggaaagttgcaagctatgaattctccacaagagttcttagagattttagttgttctgtg |
13099922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 287 - 390
Target Start/End: Complemental strand, 13080505 - 13080402
Alignment:
| Q |
287 |
gatcttcttggtgagggaatttttgctgttgatggtgacaagtggaagcagcagagaaaaattgctagctatgaattttctacaagagttcttagagatt |
386 |
Q |
| |
|
|||||| | ||||| || ||||||||||||||||||| || |||| ||| || || || || |||| | || ||||||||||||||||||||||||| |
|
|
| T |
13080505 |
gatcttttgggtgatgggatttttgctgttgatggtgctaaatggaggcaccaaaggaagctttctagtttggagttttctacaagagttcttagagatt |
13080406 |
T |
|
| Q |
387 |
ttag |
390 |
Q |
| |
|
|||| |
|
|
| T |
13080405 |
ttag |
13080402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University