View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18149_low_4 (Length: 406)
Name: NF18149_low_4
Description: NF18149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18149_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 19 - 399
Target Start/End: Complemental strand, 33857340 - 33856955
Alignment:
| Q |
19 |
ataaaatgcatgaacccctattttaataatccaaagatatagacttcatcagttcattac---gtggaaaaattctatcatcaattagtttttcttc--- |
112 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
33857340 |
ataaaatgcatgaacccctattttaatactccaaagatatagacttcatcagttcattaacgtgtgaaaaaattctatcatcaattagtttttcttcttc |
33857241 |
T |
|
| Q |
113 |
aacaatgcagtgtgtcacaacttaatccatcaattagtaacctaatcaaattagtctctaaattaggactccgtctgtctcaatccaacaaagattaaac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33857240 |
aacaatgcagtgtgtcacaacttaatccatcaattagtttt-taatcaaattagtctctaaattaggactccgtctgtctcaatccaacaaagattaaac |
33857142 |
T |
|
| Q |
213 |
aatttaaatgtcatacatacaactggaggactaatattatggtggatggcaacaaaccaaaaatcatggcattgcggcatatggtagaaccatggcatat |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33857141 |
aatttaaatgtcatacatacaactggaggactaatattatggtggatggcaacaaaccaaaaatcatggcattgcagcatatggtagaaccatggcatat |
33857042 |
T |
|
| Q |
313 |
atatatagcaagcnnnnnnnncggcagaaaatcataaacatatgtgaagtgcaattaataatcataaactactaatcattcatctca |
399 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33857041 |
atatatagcaagcaaaaaaaacggcagaaaatcataaacatatgtgaagtgcaattaataatcataaactactaatcattcatctca |
33856955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 19 - 399
Target Start/End: Original strand, 33923583 - 33923968
Alignment:
| Q |
19 |
ataaaatgcatgaacccctattttaataatccaaagatatagacttcatcagttcattac---gtggaaaaattctatcatcaattagtttttcttc--- |
112 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
33923583 |
ataaaatgcatgaacccctattttaatactccaaagatatagacttcatcagttcattaacgtgtgaaaaaattctatcatcaattagtttttcttcttc |
33923682 |
T |
|
| Q |
113 |
aacaatgcagtgtgtcacaacttaatccatcaattagtaacctaatcaaattagtctctaaattaggactccgtctgtctcaatccaacaaagattaaac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33923683 |
aacaatgcagtgtgtcacaacttaatccatcaattagtttt-taatcaaattagtctctaaattaggactccgtctgtctcaatccaacaaagattaaac |
33923781 |
T |
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| Q |
213 |
aatttaaatgtcatacatacaactggaggactaatattatggtggatggcaacaaaccaaaaatcatggcattgcggcatatggtagaaccatggcatat |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33923782 |
aatttaaatgtcatacatacaactggaggactaatattatggtggatggcaacaaaccaaaaatcatggcattgcagcatatggtagaaccatggcatat |
33923881 |
T |
|
| Q |
313 |
atatatagcaagcnnnnnnnncggcagaaaatcataaacatatgtgaagtgcaattaataatcataaactactaatcattcatctca |
399 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33923882 |
atatatagcaagcaaaaaaaacggcagaaaatcataaacatatgtgaagtgcaattaataatcataaactactaatcattcatctca |
33923968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 31 - 301
Target Start/End: Complemental strand, 47872674 - 47872396
Alignment:
| Q |
31 |
aacccctattttaataatccaaagatatagacttcatcagttcattacgtggaaaaattctatcatcaattagtttttcttcaacaatgcagtgtgtcac |
130 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||||||||||| || ||| |||||||||| || || |||||||||||||||| ||||||| |
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| T |
47872674 |
aacccctattttaatactccaaagatatagactccatcagttcattacatgacaaatttctatcatcgat--gtagttcttcaacaatgcagagtgtcac |
47872577 |
T |
|
| Q |
131 |
aacttaatccatcaattagt----aacctaatcaaattagtctctaaattaggactccgtctgtctcaatccaacaaagattaaacaatttaaat----- |
221 |
Q |
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||||||||||||||| | || || | |||||||||||||||||||||||||||| | || ||||||||||||||| ||||| |||||| |
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| T |
47872576 |
aacttaatccatcaaattgtgcaaaatttcatcaaattagtctctaaattaggactccattacacttaatccaacaaagattgaacaaattaaatatgcc |
47872477 |
T |
|
| Q |
222 |
-gtcatacatacaactggaggactaatattatggtggatggcaacaaaccaaaaatcatggcattgcggcatatggtagaa |
301 |
Q |
| |
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| ||| ||| |||| ||| |||||| ||||| |||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
47872476 |
acttatatatataactagagaactaatgttatgttggatggcgacaaaccaaaaatcatggcattacggcatatggtagaa |
47872396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 31 - 148
Target Start/End: Original strand, 49547324 - 49547446
Alignment:
| Q |
31 |
aacccctattttaataatccaaagatatagacttcatcagttcattacgtggaaaaattctatcatca---attagttt--ttcttcaacaatgcagtgt |
125 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||| ||| ||||||||||||| |||||||||||||||| || ||||| |||| ||||| ||||| || |
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| T |
49547324 |
aacccctattttaatactccaaagatataaactacattagttcattacgtgaaaaaattctatcatcactcatcagtttagttctccaacagtgcagagt |
49547423 |
T |
|
| Q |
126 |
gtcacaacttaatccatcaatta |
148 |
Q |
| |
|
| | ||||||||||||||||||| |
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| T |
49547424 |
gacccaacttaatccatcaatta |
49547446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 221
Target Start/End: Original strand, 44261733 - 44261763
Alignment:
| Q |
191 |
ctcaatccaacaaagattaaacaatttaaat |
221 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
44261733 |
ctcaatccaacaaagattaaacaatttaaat |
44261763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 387
Target Start/End: Complemental strand, 47872343 - 47872307
Alignment:
| Q |
351 |
catatgtgaagtgcaattaataatcataaactactaa |
387 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||| |
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|
| T |
47872343 |
catatgagaagtgcaatgaataatcataaactactaa |
47872307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 346 - 387
Target Start/End: Complemental strand, 14961599 - 14961558
Alignment:
| Q |
346 |
ataaacatatgtgaagtgcaattaataatcataaactactaa |
387 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||| |
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|
| T |
14961599 |
ataaacatatgtgaaatgcaatgaataatcataaactactaa |
14961558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 31264663 - 31264611
Alignment:
| Q |
163 |
ttagtctctaaattaggactccgtctgtctcaatccaacaaagattaaacaat |
215 |
Q |
| |
|
||||||| ||||||||||||| | ||||||| ||||||||||||| |||||| |
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|
| T |
31264663 |
ttagtcttaaaattaggactccatttgtctcattccaacaaagattgaacaat |
31264611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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