View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18149_low_5 (Length: 402)
Name: NF18149_low_5
Description: NF18149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18149_low_5 |
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| [»] scaffold0209 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 15 - 386
Target Start/End: Original strand, 115526 - 115897
Alignment:
| Q |
15 |
aaaatcattatactgattttttagtttcatagggagataggaatatctaatcaaatcagtgaaatgacgtgatttctcccatttctttgcctcaaacttt |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
115526 |
aaaatcattatactgattttttagtttcatagggagataggaatatctaatcaaatcagtgaaatgacgtgatttctcccatttctttgcctcaaacttt |
115625 |
T |
|
| Q |
115 |
ctttctgaagattccttgtgatgcgggtaacaagatgcaaaatactcatgtgcaagcttgagaaaccaattgtgctttttgaccttgcttggaacaattg |
214 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
115626 |
ctttctgaagattccttgtgatgcgggtaacaagatgcaaaatactcatgtgcaagcttgagaaaccaattgtgctttttgaccttgcttggaacaattg |
115725 |
T |
|
| Q |
215 |
tgtcatatagtttttccaacacataaattggaagctgattctcaagaagcaacaaatcccgttggatacttttacttacacaaagttgagttattatata |
314 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
115726 |
tgtcatatagtttttccaacacataaattggaagctgattctcaagaagcaacaaatcccgctggatacttttacttacacaaagttgagttattatata |
115825 |
T |
|
| Q |
315 |
atcatctttgtgctcccattttttattttctcttagaaacaactccatgatgaacacagaatccaatagtat |
386 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
115826 |
atcatctttgtgctcccattttttattttctcttagaaacaactccatgatgaacacagaatccaatagtat |
115897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 35 - 386
Target Start/End: Complemental strand, 606931 - 606580
Alignment:
| Q |
35 |
ttagtttcatagggagataggaatatctaatcaaatcagtgaaatgacgtgatttctcccatttctttgcctcaaactttctttctgaagattccttgtg |
134 |
Q |
| |
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|||||||||| |||||||| ||||||||||||||||| |||||||| ||||||||||||| || ||| |||||||| |||||||||| || |||||||| |
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| T |
606931 |
ttagtttcattgggagatatgaatatctaatcaaatcggtgaaatggagtgatttctcccaatttttttcctcaaacattctttctgatgactccttgtg |
606832 |
T |
|
| Q |
135 |
atgcgggtaacaagatgcaaaatactcatgtgcaagcttgagaaaccaattgtgctttttgaccttgcttggaacaattgtgtcatatagtttttccaac |
234 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| ||||||| ||||| |||||| |||||||| |||||||||||| |||||||||| |||||| ||| |
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| T |
606831 |
atgagggtaacaagatgcaaaatactcatgtgctagcttgataaaccgattgtggtttttgacactgcttggaacaaccgtgtcatataatttttctaac |
606732 |
T |
|
| Q |
235 |
acataaattggaagctgattctcaagaagcaacaaatcccgttggatacttttacttacacaaagttgagttattatataatcatctttgtgctcccatt |
334 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||| |||||||||||||| |||||| |
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| T |
606731 |
acatagattggaagctgattctcaagaagcaacaaatcccgttggatacttttgcttacacaatgttgagttactatgtaatcatctttgtgttcccatc |
606632 |
T |
|
| Q |
335 |
ttttattttctcttagaaacaactccatgatgaacacagaatccaatagtat |
386 |
Q |
| |
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|||| || ||||| ||||||||||||||||||||||||| |||||||||||| |
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|
| T |
606631 |
tttttttctctctaagaaacaactccatgatgaacacagcatccaatagtat |
606580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 39 - 372
Target Start/End: Complemental strand, 178240 - 177904
Alignment:
| Q |
39 |
tttcatagggagataggaatatctaatcaaatcagtgaaatgacgtgatttctcccatttctttgcctcaaactttctttctgaagat---tccttgtga |
135 |
Q |
| |
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|||||| |||||||| | | ||||||| |||||| |||||||| ||||||||||||| ||||||| | ||||| | |||||||||||| || | ||| |
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|
| T |
178240 |
tttcatggggagataagcacatctaattaaatcaatgaaatgaagtgatttctcccacttctttgacccaaacatactttctgaagatgattcatgttga |
178141 |
T |
|
| Q |
136 |
tgcgggtaacaagatgcaaaatactcatgtgcaagcttgagaaaccaattgtgctttttgaccttgcttggaacaattgtgtcatatagtttttccaaca |
235 |
Q |
| |
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|| || ||||||||| ||||||| ||||||||||| || |||||||| |||||||||||| | |||||||||||| ||||||||||||||||||||||| |
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| T |
178140 |
tgaggataacaagatacaaaatattcatgtgcaagatttagaaaccatttgtgctttttgtcactgcttggaacaactgtgtcatatagtttttccaaca |
178041 |
T |
|
| Q |
236 |
cataaattggaagctgattctcaagaagcaacaaatcccgttggatacttttacttacacaaagttgagttattatataatcatctttgtgctcccattt |
335 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| || | || ||| ||||||||| |||||||||||||| |||||||||||||||||| |||||||| |
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|
| T |
178040 |
cataaattggaatctgattctcaagaagcaacaagtcatgctgaatatttttacttaaacaaagttgagttactatataatcatctttgtgttcccattt |
177941 |
T |
|
| Q |
336 |
tttattttctcttagaaacaactccatgatgaacaca |
372 |
Q |
| |
|
|||| |||||||| ||||| |||||||||||||||| |
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| T |
177940 |
tttagcttctcttaaaaacagctccatgatgaacaca |
177904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209 (Bit Score: 156; Significance: 9e-83; HSPs: 2)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 35 - 386
Target Start/End: Original strand, 9938 - 10289
Alignment:
| Q |
35 |
ttagtttcatagggagataggaatatctaatcaaatcagtgaaatgacgtgatttctcccatttctttgcctcaaactttctttctgaagattccttgtg |
134 |
Q |
| |
|
|||| ||||| |||||||| ||| | |||||||||||||| |||||| |||||||||||| || ||| |||||||| |||||| ||| || || | ||| |
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|
| T |
9938 |
ttagcttcattgggagataagaagacctaatcaaatcagtaaaatgaaatgatttctcccaatttttttcctcaaacattctttttgatgactcttggtg |
10037 |
T |
|
| Q |
135 |
atgcgggtaacaagatgcaaaatactcatgtgcaagcttgagaaaccaattgtgctttttgaccttgcttggaacaattgtgtcatatagtttttccaac |
234 |
Q |
| |
|
||| ||||| ||||| |||||||| |||||||| ||| || |||| |||||| |||||||| ||| ||||||||| |||| |||| ||||| ||||| |
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| T |
10038 |
atgagggtagcaagaagcaaaatagtcatgtgctagcatggtaaacagattgtggtttttgacattgtttggaacaactgtgccatagagtttctccaag |
10137 |
T |
|
| Q |
235 |
acataaattggaagctgattctcaagaagcaacaaatcccgttggatacttttacttacacaaagttgagttattatataatcatctttgtgctcccatt |
334 |
Q |
| |
|
||||| |||||||| |||||||||| |||||||||||||| ||| |||||| |||| ||||||||||||||||| ||||||||||||||||| ||||||| |
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|
| T |
10138 |
acatacattggaagttgattctcaataagcaacaaatccctttgaatacttctactcacacaaagttgagttataatataatcatctttgtgttcccatt |
10237 |
T |
|
| Q |
335 |
ttttattttctcttagaaacaactccatgatgaacacagaatccaatagtat |
386 |
Q |
| |
|
|||| |||||||||| ||| |||||||||||||| ||||||||||| ||||| |
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|
| T |
10238 |
ttttgttttctcttaaaaataactccatgatgaagacagaatccaacagtat |
10289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 35 - 386
Target Start/End: Original strand, 23392 - 23743
Alignment:
| Q |
35 |
ttagtttcatagggagataggaatatctaatcaaatcagtgaaatgacgtgatttctcccatttctttgcctcaaactttctttctgaagattccttgtg |
134 |
Q |
| |
|
|||| ||||| |||||||| ||| | |||||||||||||| |||||| |||||||||||| || ||| |||||||| |||||| ||| || || | ||| |
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|
| T |
23392 |
ttagcttcattgggagataagaagacctaatcaaatcagtaaaatgaaatgatttctcccaatttttttcctcaaacattctttttgatgactcttggtg |
23491 |
T |
|
| Q |
135 |
atgcgggtaacaagatgcaaaatactcatgtgcaagcttgagaaaccaattgtgctttttgaccttgcttggaacaattgtgtcatatagtttttccaac |
234 |
Q |
| |
|
||| ||||| ||||| |||||||| |||||||| ||| || |||| |||||| |||||||| ||| ||||||||| |||| |||| ||||| ||||| |
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|
| T |
23492 |
atgagggtagcaagaagcaaaatagtcatgtgctagcatggtaaacagattgtggtttttgacattgtttggaacaactgtgccatagagtttctccaag |
23591 |
T |
|
| Q |
235 |
acataaattggaagctgattctcaagaagcaacaaatcccgttggatacttttacttacacaaagttgagttattatataatcatctttgtgctcccatt |
334 |
Q |
| |
|
||||| |||||||| |||||||||| |||||||||||||| ||| |||||| |||| ||||||||||||||||| ||||||||||||||||| ||||||| |
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|
| T |
23592 |
acatacattggaagttgattctcaataagcaacaaatccctttgaatacttctactcacacaaagttgagttataatataatcatctttgtgttcccatt |
23691 |
T |
|
| Q |
335 |
ttttattttctcttagaaacaactccatgatgaacacagaatccaatagtat |
386 |
Q |
| |
|
|||| |||||||||| ||| |||||||||||||| ||||||||||| ||||| |
|
|
| T |
23692 |
ttttgttttctcttaaaaataactccatgatgaagacagaatccaacagtat |
23743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 9e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 35 - 386
Target Start/End: Original strand, 37438172 - 37438525
Alignment:
| Q |
35 |
ttagtttcatagggagataggaatatctaatcaaatcagtgaaatgacgtgatttctcccatttctttgcctcaaactttctttctgaagattccttgtg |
134 |
Q |
| |
|
|||||||||| ||||||| || |||||||||||||| |||||||| || |||| ||||| || |||| |||||||||||||||||||||||| ||||| |
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|
| T |
37438172 |
ttagtttcatcgggagatcataacatctaatcaaatcaatgaaatgaagttatttgtcccaattttttgactcaaactttctttctgaagattctttgtg |
37438271 |
T |
|
| Q |
135 |
atgcgggtaacaagatgcaaaatactcatgtgcaagcttgagaaaccaattgtgctttttgaccttgcttggaacaattgtgtcatatagtttttccaac |
234 |
Q |
| |
|
| ||||||||||||| ||| || |||||| ||||||| ||||||||||| ||||||||| || |||| |||| | |||||||||||||| ||||| |
|
|
| T |
37438272 |
acaagggtaacaagatgaaaagtatgcatgtgatagcttgataaaccaattgtcctttttgacactggttgggacaactatgtcatatagttttaccaac |
37438371 |
T |
|
| Q |
235 |
acataaattggaagctgattctcaagaagcaacaaatcccgttggatacttttacttacacaaag-ttgagttattatataatcatctttgtgctcccat |
333 |
Q |
| |
|
| | |||||||||| ||||| | |||| |||||| || |||||| | |||||||||| ||| | ||| | || || |||||||||||| || ||| || |
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|
| T |
37438372 |
aaaaaaattggaagttgattttagagaaacaacaagtcatgttggacaattttacttactcaatgtttgggatactaaataatcatctttttgttcctat |
37438471 |
T |
|
| Q |
334 |
tttttattttctctt-agaaacaactccatgatgaacacagaatccaatagtat |
386 |
Q |
| |
|
|| ||| ||||||| | ||||||| ||||||||||||| |||||| ||||| |
|
|
| T |
37438472 |
ttattagcttctcttaaaaaacaacatcatgatgaacacaacatccaacagtat |
37438525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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