View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18149_low_7 (Length: 377)
Name: NF18149_low_7
Description: NF18149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18149_low_7 |
 | |
|
| [»] scaffold0653 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 368
Target Start/End: Original strand, 28600219 - 28600569
Alignment:
| Q |
18 |
cttcaatcgccattgcgaccataatataacagtttttggcttttagctgcatcagcaactataattatggttgcattgttcgcatttgcctgcatttaac |
117 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28600219 |
cttcaatcgccattgcgatcataatataacagtttttggcttttagctgcatcagcaactataattatggttgcattgttcgcatttgcctgcatttaac |
28600318 |
T |
|
| Q |
118 |
tgtaagataaaagttcatctatgattgcggccacaatataactgttttagaagtctaatcaactgcaatcacggttgcatcggttgagtctgtttgcatt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28600319 |
tgtaagataaaagttcatctatgattgcggccacaatataactgttttagaagtctaagcaactgcaatcacggttgcatcggttgagtttgtttgcatt |
28600418 |
T |
|
| Q |
218 |
ttagtccatggtttgcagcataactgcagctatactttagagccatgtaaatatgtataaatgcatgaatttggatcatatttaattttcttggcttgat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
28600419 |
ttagtccatggtttgcagcataactgcagctatactttagagccatgtaaatatgtataaatgcatgaatttcgatcatatttaattttcttggcttgat |
28600518 |
T |
|
| Q |
318 |
atcggaatttttcagcgattccatcacctgagggaaagagcagcatgatga |
368 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28600519 |
attggaatttttcagcgattccatcacctgagggaaagagcagcatgatga |
28600569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0653 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0653
Description:
Target: scaffold0653; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 368
Target Start/End: Original strand, 2463 - 2548
Alignment:
| Q |
279 |
tgcatgaatttggatcatat--ttaattttcttggcttgatatcggaatttttcagcgattccatcacctgagggaaagagcagcatgatga |
368 |
Q |
| |
|
||||||||||| |||||||| |||||||||||| |||| ||||||||||| ||||||||||||||| |||||||| | |||||||| |
|
|
| T |
2463 |
tgcatgaatttcgatcatatatttaattttcttgtcttg------gaatttttcagtgattccatcacctgatggaaagaggaccatgatga |
2548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 368
Target Start/End: Original strand, 9277046 - 9277131
Alignment:
| Q |
279 |
tgcatgaatttggatcatat--ttaattttcttggcttgatatcggaatttttcagcgattccatcacctgagggaaagagcagcatgatga |
368 |
Q |
| |
|
||||||||||| |||||||| |||||||||||| |||| ||||||||||| ||||||||||||||| |||||||| | |||||||| |
|
|
| T |
9277046 |
tgcatgaatttcgatcatatatttaattttcttgtcttg------gaatttttcagtgattccatcacctgatggaaagaggaccatgatga |
9277131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 368
Target Start/End: Original strand, 9294698 - 9294783
Alignment:
| Q |
279 |
tgcatgaatttggatcatat--ttaattttcttggcttgatatcggaatttttcagcgattccatcacctgagggaaagagcagcatgatga |
368 |
Q |
| |
|
||||||||||| |||||||| |||||||||||| |||| ||||||||||| ||||||||||||||| |||||||| | |||||||| |
|
|
| T |
9294698 |
tgcatgaatttcgatcatatatttaattttcttgtcttg------gaatttttcagtgattccatcacctgatggaaagaggaccatgatga |
9294783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University