View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18149_low_9 (Length: 345)
Name: NF18149_low_9
Description: NF18149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18149_low_9 |
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| [»] scaffold0179 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 20 - 333
Target Start/End: Complemental strand, 45074770 - 45074450
Alignment:
| Q |
20 |
aaccgagtggaacaaaagtgacttatatgtatatgcatcatacaagtaataagcatatctaggaaattgggagagtgaaagaggaataacataagcttaa |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
45074770 |
aaccgagtggaacaaaagtgacttatatgtatatgcatcatacaagtaataagcatatccaggaaattgggagagtgaaagaggaataacataagcttaa |
45074671 |
T |
|
| Q |
120 |
cttcgaagttgatgtcaaggtgtagcatttttactttgagnnnnnnngaga-------ggggatgtcaaccattcatgaggaaagtaattgtagacatta |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45074670 |
cttcgaagttgatgtcaaggtgtagcatttttactttgagaaaaaaaaaaaaaaaaaaggggatgtcaaccattcatgaggaaagtaattgtaagcatta |
45074571 |
T |
|
| Q |
213 |
cgcaaaaccaaattttatcacattttacaaagtaaaataatagggattgttatgtcaaatttttgcgtggaaataatattcacatcatgccatgtactcc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45074570 |
cgcaaaaccaaattttatcacattttacaaagtaaaataatagggattgttatgccaaatttttgcgtggaaataatattcacatcatgccatgtactcc |
45074471 |
T |
|
| Q |
313 |
ctttcattgatgaccatgttc |
333 |
Q |
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||||||||||||||||||||| |
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| T |
45074470 |
ctttcattgatgaccatgttc |
45074450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 148; Significance: 5e-78; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 170 - 333
Target Start/End: Original strand, 27366431 - 27366594
Alignment:
| Q |
170 |
aggggatgtcaaccattcatgaggaaagtaattgtagacattacgcaaaaccaaattttatcacattttacaaagtaaaataatagggattgttatgtca |
269 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
27366431 |
aggggatgtcaaccattcatgaggaaagtaatggtagacattacgcaaaaccaaattttatcacattttacaaagtaaaataatagggattgttatgcca |
27366530 |
T |
|
| Q |
270 |
aatttttgcgtggaaataatattcacatcatgccatgtactccctttcattgatgaccatgttc |
333 |
Q |
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| T |
27366531 |
aatttttgcgtggaaataatattcacagcatgccatgtactccctttcattgatgaccgtgttc |
27366594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 170 - 333
Target Start/End: Original strand, 27456778 - 27456941
Alignment:
| Q |
170 |
aggggatgtcaaccattcatgaggaaagtaattgtagacattacgcaaaaccaaattttatcacattttacaaagtaaaataatagggattgttatgtca |
269 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
27456778 |
aggggatgtcaaccattcatgaggaaagtaatggtagacattacgcaaaaccaaattttatcacattttacaaagtaaaataatagggattgttatgcca |
27456877 |
T |
|
| Q |
270 |
aatttttgcgtggaaataatattcacatcatgccatgtactccctttcattgatgaccatgttc |
333 |
Q |
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| T |
27456878 |
aatttttgcgtggaaataatattcacagcatgccatgtactccctttcattgatgaccgtgttc |
27456941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 27366256 - 27366380
Alignment:
| Q |
20 |
aaccgagtggaacaaaagtgacttatatgtatatgcatcatacaagtaataa-gcatatctaggaaattgggagagtgaaagaggaataacataagctta |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
27366256 |
aaccgagtggaacaaaagtgacttatatgtatatgcatcatacaagtaataaagcatatccaggaaattgggagagtgaaagaggaatatcataagctta |
27366355 |
T |
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| Q |
119 |
acttcgaagttgatgtcaaggtgta |
143 |
Q |
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||||||||||| ||||||||||||| |
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| T |
27366356 |
acttcgaagttaatgtcaaggtgta |
27366380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 27456603 - 27456727
Alignment:
| Q |
20 |
aaccgagtggaacaaaagtgacttatatgtatatgcatcatacaagtaataa-gcatatctaggaaattgggagagtgaaagaggaataacataagctta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
27456603 |
aaccgagtggaacaaaagtgacttatatgtatatgcatcatacaagtaataaagcatatccaggaaattgggagagtgaaagaggaatatcataagctta |
27456702 |
T |
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| Q |
119 |
acttcgaagttgatgtcaaggtgta |
143 |
Q |
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||||||||||| ||||||||||||| |
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| T |
27456703 |
acttcgaagttaatgtcaaggtgta |
27456727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 167 - 324
Target Start/End: Complemental strand, 23121307 - 23121147
Alignment:
| Q |
167 |
gagaggggatgtcaaccattcatgaggaaagtaattgtagacattacgcaaaaccaaattttatcacattttacaaagtaaaataatagggattgttatg |
266 |
Q |
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|
|||||||||||| |||||||| |||||||| ||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
23121307 |
gagaggggatgttaaccattcgtgaggaaaataattgtagtcattaggcaaaaccaaattttatcacatttttgaaagtaaaataattgggattgttatg |
23121208 |
T |
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| Q |
267 |
tcaaatttt--tgcgtggaaataatattca-catcatgccatgtactccctttcattgatg |
324 |
Q |
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|| |||| || || ||||||||||||| | ||||| ||||| |||||||| ||||||| |
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| T |
23121207 |
ctaattttttatgtgtagaaataatattcatcgtcatgtcatgtgctccctttaattgatg |
23121147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 52 - 266
Target Start/End: Original strand, 51093778 - 51093991
Alignment:
| Q |
52 |
atgcatcatacaagtaataagcatatctaggaaattgggagagtgaaagaggaataacataagcttaacttcgaagttgatgtcaaggtgtag-catttt |
150 |
Q |
| |
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||||||||||||||||||||||||||| || |||| |||||||||||||||||| | |||| |||||||||| ||||| ||||||||||| || | || |
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| T |
51093778 |
atgcatcatacaagtaataagcatatccagaaaatagggagagtgaaagaggaacatcatatgcttaacttctaagttaatgtcaaggtgcagtaaaatt |
51093877 |
T |
|
| Q |
151 |
tactttgagnnnnnnngagaggggatgtcaaccattcatgaggaaagtaattgtagacattacgcaaaaccaaattttatcacattttacaaagtaaaat |
250 |
Q |
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||||||| |||||||||||||||||||||||||||||||| | |||| ||||| | | ||||||| |||||||||||| |||| | |||| |
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| T |
51093878 |
gactttga--aaaaaagagaggggatgtcaaccattcatgaggaaagttacggtagtcattaggatacaccaaatattatcacatttttcaaaattaaat |
51093975 |
T |
|
| Q |
251 |
aatagggattgttatg |
266 |
Q |
| |
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||| || |||| |||| |
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| T |
51093976 |
aattggaattgatatg |
51093991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 167 - 234
Target Start/End: Original strand, 22631218 - 22631285
Alignment:
| Q |
167 |
gagaggggatgtcaaccattcatgaggaaagtaattgtagacattacgcaaaaccaaattttatcaca |
234 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||| ||||| |||||| |||||||||||||| |
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| T |
22631218 |
gagaggggatgtcaaccattcatgaggaaaataattgtagtcattaggcaaaatcaaattttatcaca |
22631285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 22631105 - 22631163
Alignment:
| Q |
80 |
aggaaattgggagagtgaaagaggaata--acataagcttaacttcgaagttgatgtca |
136 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||| ||||| |||||| |
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|
| T |
22631105 |
aggaaattgggagagtgaaagaggaatagcacatttgcttaacttctaagttaatgtca |
22631163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 50 - 105
Target Start/End: Original strand, 27761 - 27816
Alignment:
| Q |
50 |
atatgcatcatacaagtaataagcatatctaggaaattgggagagtgaaagaggaa |
105 |
Q |
| |
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||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
27761 |
atatgcatcatacaagtaataagcatatccaataaattgggagagtgaaagaggaa |
27816 |
T |
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