View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18151_high_14 (Length: 273)
Name: NF18151_high_14
Description: NF18151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18151_high_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 12631318 - 12631059
Alignment:
| Q |
1 |
tcaattactatgaaaaagatgaaaagttcaagaaatgcatggatagacacttatgagtaaaggcaaatagaaaatttcatgaactacaaatatactagga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
12631318 |
tcaattactatgaaaaagatgaaaagttcaagaaatgcatggatagacacttatgagtaaaggcaaatagaaactttcatgaactacaaaaatactagga |
12631219 |
T |
|
| Q |
101 |
catgaatgatcttcattgtctttcatccaagggcggttgtaaggctagaaagtagcttacgaaatatgttatctgccaaaaccgttcctaagaagcttgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12631218 |
catgaatgatcttcattgtctttcatccaagggcggttgtaaggctagaaagtagcttacgaaatatgttatctgccaaaaccgttcctaagaagcttgc |
12631119 |
T |
|
| Q |
201 |
aaaatatgcatgtaagagtctatcttaagtcaacaatgaaggctccgtttgtgctctctg |
260 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12631118 |
aaaatatgcatgtaagagtctatcttaattcaacaatgaaggctccgtttgtgctctctg |
12631059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 45289128 - 45288869
Alignment:
| Q |
1 |
tcaattactatgaaaaagatgaaaagttcaagaaatgcatggatagacacttatgagtaaaggcaaatagaaaatttcatgaactacaaatatactagga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||| |
|
|
| T |
45289128 |
tcaattactatgaaaaagatgaaaagttcaagaaatgcatcgatagacacttatgagtaaaggcaaatagaaactttcatgaactacaaaaatattagga |
45289029 |
T |
|
| Q |
101 |
catgaatgatcttcattgtctttcatccaagggcggttgtaaggctagaaagtagcttacgaaatatgttatctgccaaaaccgttcctaagaagcttgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45289028 |
catgaatgatcttcattgtctttcatccaagggcggttgtaaggctagaaagtagcttacgaaatatgttatctgccaaaaccgttcctaagaagcttgc |
45288929 |
T |
|
| Q |
201 |
aaaatatgcatgtaagagtctatcttaagtcaacaatgaaggctccgtttgtgctctctg |
260 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
45288928 |
aaaatatgcatgtaagagtctatcttaattcaacaatgaaggctccgtttgtgctctctg |
45288869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 26 - 260
Target Start/End: Original strand, 31607683 - 31607917
Alignment:
| Q |
26 |
gttcaagaaatgcatggatagacacttatgagtaaaggcaaatagaaaatttcatgaactacaaatatactaggacatgaatgatcttcattgtctttca |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
31607683 |
gttcaagaaatgcatggatagacacttatgagtaaatgcaaatagaaactttcatgaactacaaaaatactaggacatgaatgatcttcattgtctttca |
31607782 |
T |
|
| Q |
126 |
tccaagggcggttgtaaggctagaaagtagcttacgaaatatgttatctgccaaaaccgttcctaagaagcttgcaaaatatgcatgtaagagtctatct |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31607783 |
tccaagggcggttgtaaggctagaaagtagcttacgaaatatgttatctgccaaaaccgttcctaagaagcttgcaaaatatgcatgtaagagtctatct |
31607882 |
T |
|
| Q |
226 |
taagtcaacaatgaaggctccgtttgtgctctctg |
260 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31607883 |
taattcaacaatgaaggctccgtttgtgctctctg |
31607917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University