View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18151_high_9 (Length: 389)
Name: NF18151_high_9
Description: NF18151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18151_high_9 |
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| [»] scaffold0019 (2 HSPs) |
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Alignment Details
Target: scaffold0019 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 297 - 374
Target Start/End: Complemental strand, 151068 - 150991
Alignment:
| Q |
297 |
gttctgatttatttaacaataactaacacttcattttcattttatttttacaggttcattttctaatggaaaggtaat |
374 |
Q |
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| T |
151068 |
gttctggtttatttaacattaactaacacctcattttcattttatttttacaggttcattttctaatggaaaggtaat |
150991 |
T |
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Target: scaffold0019; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 290 - 374
Target Start/End: Complemental strand, 179923 - 179839
Alignment:
| Q |
290 |
aggttgagttctgatttatttaacaataactaacacttcattttcattttatttttacaggttcattttctaatggaaaggtaat |
374 |
Q |
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|||||| |||||| ||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
179923 |
aggttgtgttctggtttatttaacattaactaacacctcattttcattttcattttacaggttcattttctaatggaaaggtaat |
179839 |
T |
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